PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g59110.1.p | ||||||||
Common Name | BRADI_2g59110, LOC100823756 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SBP | ||||||||
Protein Properties | Length: 396aa MW: 41667.1 Da PI: 9.0646 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.2 | 1.5e-40 | 68 | 144 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C vegC+adls+++eyhrrhkvCe+hsk+pvv v+g++qrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ Bradi2g59110.1.p 68 CSVEGCAADLSRCREYHRRHKVCEAHSKTPVVSVAGQQQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKQQP 144 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.7E-33 | 62 | 129 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.829 | 65 | 142 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-38 | 66 | 146 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.5E-29 | 68 | 141 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MDWEAKMPSW DLGTVVGPSG GGGGGLDLKL GGPTSWRPVP AATAAPVAPS SSPTPAKRAR 60 AGAPAPACSV EGCAADLSRC REYHRRHKVC EAHSKTPVVS VAGQQQRFCQ QCSRFHLLVE 120 FDEVKRSCRK RLDGHNRRRR KQQPDPLGPA GLFANHHGGG TRFVSYPQIF STTTSMAPEH 180 KWPGSIAVKT EADAFQVEQY YSSLQLNGAA NAAASLFHGK ERSKRFPFLS DHHGDTGFQQ 240 QPFTITPSSE SSSNSSSRHS NGNKMFATND GGPDHNCALS LLSDSPTTQA AHTMITAAAQ 300 HLGGARIHYN VGGDGGGGVS LTGLSYASAI MGDNKGSAQA AMASSTRHAG AVTTAPSVAA 360 QLQQYHGYYQ HQVNGDQGNS ADAGASMQAL PFSSW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-26 | 68 | 141 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g59110.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356077 | 1e-129 | AK356077.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1029L02. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232756.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Swissprot | Q0JGI1 | 1e-118 | SPL2_ORYSJ; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | I1HUP5 | 0.0 | I1HUP5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G59110.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10456 | 30 | 38 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 3e-33 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g59110.1.p |
Entrez Gene | 100823756 |
Publications ? help Back to Top | |||
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