PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g58503.1.p
Common NameBRADI_2g58503, LOC104583363
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 387aa    MW: 41172.9 Da    PI: 4.6652
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g58503.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.76.4e-131147339
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                      i++ ++r+  f+ R++g+lK A+ELS+LC + vav++
  Bradi2g58503.1.p 11 ISDRRKRSAAFATRKKGLLKMASELSTLCSVPVAVVL 47
                      999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-8163IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-14185IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.652147IPR002100Transcription factor, MADS-box
CDDcd001206.59E-15246No hitNo description
PfamPF003193.6E-121147IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGRGKTSMRL ISDRRKRSAA FATRKKGLLK MASELSTLCS VPVAVVLGAP APAAGGPNGA  60
APPPEVWETE EGVLERYRAL PAEKRAEHTH LRYLEGNLGK EEAKLARVLH KGPAALAPPD  120
AELNGMSLDE LRAVLESVDA ALLATAERKK ALGLPEHDDD DAVDPCIGGS FVGLDGGYYE  180
MEEPVDGRLD RQAIWDANAM NMMQPGPGYY GFPNMNVAQP ACDARGFLLD MAPGINGGNY  240
HGQLAQGSFY SQQQQQQNAI SHPAYGGFQY TGGNTGYAAP MGSSSQMQMP SNANDDLTMW  300
RTAEPACNAI VPAGWCPDLF TDNNLYTTAP GYLGMGNGGG DAMNYVSCND TLYCSSNDFQ  360
CSGSGTTSQN SSNIEDLPYL RDGARR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g58503.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755040.10.0uncharacterized protein LOC104583363
TrEMBLA0A0Q3IZN50.0A0A0Q3IZN5_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Representative plantOGRP1278735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.17e-06AGAMOUS-like 79