PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g58261.2.p

Common Name

BRADI_2g58261, LOC100837781

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 301aa MW: 32089.7 Da PI: 4.3056

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g58261.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	278	299	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C+k+F + Lk+H + H Bradi2g58261.2.p 278 CKSCSKTFGSDAALKSHEKAkH 299 *****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.533	276	300	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	278	299	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MTMIKFWGVE VKPGQTVSCD GGHDHIIHVS QAALVETKKG SGNVVVSTKI DDQKVIIGTL 60 SAENHPQILC DLNFQKKFEL SHNSETASVF VCGYQSFMPD EFDPDSSEDE DEVEAVNNQV 120 INNVGGIHEV TAPAKDGKKG TDGNGSDDDS DDDLLDLLSS GDDEMTDDDS SSEEDDTTSE 180 EDDTSSEEDD ISSEESSSDE EDEETLKEPE ISKKRVAATA LKAPASDKKA KIATPSGQKT 240 DDKKATHVTT PHPAKQAKTP ANSKPKKSPK STGGTVACKS CSKTFGSDAA LKSHEKAKHE 300 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g58261.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010232717.1	0.0	histone deacetylase HDT2 isoform X2
TrEMBL	A0A0Q3JF62	0.0	A0A0Q3JF62_BRADI; Uncharacterized protein
STRING	TRIUR3_01234-P1	4e-83	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	1e-22	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	Bradi2g58261.2.p
Entrez Gene	100837781