PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g58261.1.p | ||||||||
Common Name | BRADI_2g58261, LOC100837781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 303aa MW: 32247.9 Da PI: 4.3056 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00056 | 280 | 301 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C+k+F + Lk+H + H Bradi2g58261.1.p 280 CKSCSKTFGSDAALKSHEKAkH 301 *****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.533 | 278 | 302 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 280 | 301 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MTMIKFWGVE VKPGQTVSCD GGHDHIIHVS QAALVETKKG SGNVVVSTKI DDQKVIIGTL 60 SAENHPQILC DLNFQKKFEL SHNSETASVF VCGYQSFMPD EFDPDSSEDE DEVEAVNNQV 120 INNVGGIHEV TAPAKDGKKG TDGNGSDDDS DDDLLDLLSS GDDEMTDDDS SSEEDDTTSE 180 EDDTSSEEDD ISSEESSSDE EDEETLKEPE ISKKRVAATA LKAPASDKKA KIATPSGQKT 240 ASDDKKATHV TTPHPAKQAK TPANSKPKKS PKSTGGTVAC KSCSKTFGSD AALKSHEKAK 300 HE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g58261.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232716.1 | 0.0 | histone deacetylase HDT2 isoform X1 | ||||
TrEMBL | A0A0Q3GL05 | 0.0 | A0A0Q3GL05_BRADI; Uncharacterized protein | ||||
STRING | TRIUR3_01234-P1 | 6e-81 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2204 | 30 | 65 | Representative plant | OGRP1053 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 8e-23 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g58261.1.p |
Entrez Gene | 100837781 |