PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g58250.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 325aa    MW: 35009.9 Da    PI: 7.6926
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g58250.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05297320123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       y C+ C+++F++++ L+ H r+ H
  Bradi2g58250.2.p 297 YFCNSCNRTFNSSMGLEDHSRMkH 320
                       78******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.365297324IPR007087Zinc finger, C2H2
PROSITE patternPS000280299320IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSRSVYVNGS ISSTANYFTG GVVVKPGETV KCDPGESHYH ISQIALEADN MKENVEVFVN  60
VGGKRIMLGT LSVDKHPQVV TDQVFDKEFE LVHSSMTSNI CFTGYQFKIV KSSNSSSKEG  120
DDSDEEVPLA IPLDSNTDDY KNNQATHGVN KLTASRPADA PCSISKAAVQ ETDSLEGPEG  180
DHKDKTAAQD PSDDNDSKGS DQDMDHTPKK MKGNKRPVET PLKTPSAKKT NIASPTVGKK  240
TGSCVGKKSA HVHVATPYPA KQAHKISEHV HVATPHPAKH ARKTPENSDK SKQSASYFCN  300
SCNRTFNSSM GLEDHSRMKH GAAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g58250.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567378.10.0histone deacetylase HDT2 isoform X3
TrEMBLA0A2K2DGL90.0A0A2K2DGL9_BRADI; Uncharacterized protein
STRINGBRADI2G58250.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111732022
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.15e-15histone deacetylase 2C