PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi2g58250.1.p | ||||||||
Common Name | BRADI_2g58250, LOC100837477 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 313aa MW: 33936.8 Da PI: 7.6946 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 285 | 308 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+++F++++ L+ H r+ H Bradi2g58250.1.p 285 YFCNSCNRTFNSSMGLEDHSRMkH 308 78******************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.365 | 285 | 312 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 287 | 308 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009294 | Biological Process | DNA mediated transformation | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010162 | Biological Process | seed dormancy process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0005774 | Cellular Component | vacuolar membrane | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MMQGLRFWGV VVKPGETVKC DPGESHYHIS QIALEADNMK ENVEVFVNVG GKRIMLGTLS 60 VDKHPQVVTD QVFDKEFELV HSSMTSNICF TGYQFKIVKS SNSSSKEGDD SDEEVPLAIP 120 LDSNTDDYKN NQATHGVNKL TASRPADAPC SISKAAVQET DSLEGPEGDH KDKTAAQDPS 180 DDNDSKGSDQ DMDHTPKKMK GNKRPVETPL KTPSAKKTNI ASPTVGKKTG SCVGKKSAHV 240 HVATPYPAKQ AHKISEHVHV ATPHPAKHAR KTPENSDKSK QSASYFCNSC NRTFNSSMGL 300 EDHSRMKHGA AK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi2g58250.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567378.1 | 0.0 | histone deacetylase HDT2 isoform X3 | ||||
TrEMBL | I1HUF1 | 0.0 | I1HUF1_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G58250.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03740.1 | 3e-18 | histone deacetylase 2C |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi2g58250.1.p |
Entrez Gene | 100837477 |