PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g58130.4.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 1204aa    MW: 132739 Da    PI: 8.3086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g58130.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00111591185123
                        EEET..TTTEEESSHHHHHHHHHH..T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                        y+C+   C+++F+  s++ rH r+  H
  Bradi2g58130.4.p 1159 YVCHepGCTQTFRFVSDFSRHKRRtgH 1185
                        99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005453.8E-142869IPR003349JmjN domain
PROSITE profilePS5118313.8272970IPR003349JmjN domain
PfamPF023754.7E-133063IPR003349JmjN domain
SMARTSM005585.0E-47196365IPR003347JmjC domain
PROSITE profilePS5118436.963199365IPR003347JmjC domain
SuperFamilySSF511976.32E-27211363No hitNo description
PfamPF023733.8E-37229348IPR003347JmjC domain
SMARTSM003553110761098IPR015880Zinc finger, C2H2-like
SMARTSM003550.07310991123IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.44510991128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-511001127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011011123IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-911151155No hitNo description
Gene3DG3DSA:3.30.160.601.2E-811281152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01611291153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.36511291158IPR007087Zinc finger, C2H2
PROSITE patternPS00028011311153IPR007087Zinc finger, C2H2
SuperFamilySSF576677.08E-811471182No hitNo description
Gene3DG3DSA:3.30.160.601.0E-811531181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.311591185IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.22111591190IPR007087Zinc finger, C2H2
PROSITE patternPS00028011611185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1204 aa     Download sequence    Send to blast
MMSSSSSPPP PARVAAELVP PWLKSLPLAP EFHPTAAEFA DPVAYILKIE PAAEPFGICK  60
VVPPCPQPPK KTTLSNLTRS FAALHPDDPA PTFPARHQQL GLSPRSRRPA LTAVWQSSRS  120
YTLPQFESRA AASRKTLLAR LNVPASKHLS PLEHEALFWS ASADRPVTVD YASDMPGSGF  180
SAPSTCAARP PSQQAHVGET AWNMRGAARS PGSLLRFMRD EVPGVNTPML YVGMTFSWFA  240
WHVEDHDLHS LNYMHFGAAK TWYGVPRDAA LAFEDVVREH GYGGEVNPLE TFATLGKKTT  300
VMSPEVLVGL GVPCCRLVQN EGDFVVTFPG SYHCGFSHGF NCGEASNIAT PEWLRVAKEA  360
AIRRASINRP PMLSHYQLLY ELALSMCIRD PSIGPMEPRS SRLKEKKKGE GGQLVKKIFV  420
QNAIEDNELL SSLLNDGSSC IILPINADDG PVLSALRSRS QLKAKSNTSD GLCSSGEALE  480
ESRCLSETFD RNGEIINCGA LSSSKESPSS VCSGSMHDCV NLSCSSDTHN AEGDKVDVIS  540
AAGLLDQGLL SCVSCGILSF SCVAVIKPRE CTSKYLMSSD YNLINDQLVN SGRIHPANAT  600
SEGTDGGILH SDEDIQNKKI KVCHDCSELS RHMTESQHND SSHVCFDGTK MSSSSIKCQE  660
RPSSQSSQCI GGSGILNGPR GFRTRNKYLL KMALSEGFQP NNIYQSMEKK GQSEPSNSKK  720
IVKEPLVTGG TDYDARCKST AIATGDPRSS TATINISDQP IVEFDKDSSR MHVFCLEHAV  780
EVEKRLQAIG GAHIILLCRP EYLKIEAEAR TLAAEMKVEY DWKDIHFREA NMEDRDMIQE  840
VLQDEETIPT NSDWAVKLVN LKTCERNQGR QKKVVFAGRW CGRVWMSNQV HPYLARRIES  900
HELEEIDNSS GVEVSKRIGS TITAVMRSSK KRENMILKET NSKRIKQTQE CNSGALKGVA  960
EVPSPSPAGV VLRVSSRIAN RANKIKSEMT EEEDPAGRPK SEVTCPSRPG PSKQKTKVKA  1020
KNQIMPPTAS LKDEKEHPSA TKGSSVSCYT KQRTRTEAKE ATGETGTPRD PKQEEYVCNI  1080
DGCLMSFDTK KELSLHKHNI CPVKGCGKKF FVHRYLLQHR KVHTDDRPLK CPWEGCDVAF  1140
KWTWARTEHL RVHTGDRPYV CHEPGCTQTF RFVSDFSRHK RRTGHSTKKT NKHKSNQGSS  1200
KLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A5e-72223868353Transcription factor jumonji (Jmj) family protein
6ip4_A5e-72223868353Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g58130.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232711.20.0lysine-specific demethylase JMJ705
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A2K2DGL80.0A0A2K2DGL8_BRADI; Uncharacterized protein
STRINGBRADI2G58130.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-174relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]