PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g58020.1.p | ||||||||
Common Name | BRADI_2g58020, LOC100824670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ARR-B | ||||||||
Protein Properties | Length: 578aa MW: 64366.8 Da PI: 4.8671 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 80 | 2.7e-25 | 194 | 247 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G +k Pk+il+lm+v+g+t+e+v+SHLQkYRl Bradi2g58020.1.p 194 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGITRENVASHLQKYRL 247 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 81.2 | 3.5e-27 | 14 | 122 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl+vdD+p+ +++l+++l+k y ev+++ ++ ale+l+e++ +D+++ D++mp+mdG++ll++i e +lp+i+++ ge + + + ++ Bradi2g58020.1.p 14 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARVALEILRERKskFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKGVQ 104 89*********************.***************888778**********************6654.8******************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l Kp+ ++el++ Bradi2g58020.1.p 105 HGACDYLLKPVRMKELRN 122 ***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 7.8E-168 | 2 | 572 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 3.42E-35 | 11 | 135 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 9.1E-44 | 11 | 146 | No hit | No description |
SMART | SM00448 | 7.3E-32 | 12 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.762 | 13 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.3E-24 | 14 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.54E-29 | 15 | 127 | No hit | No description |
SuperFamily | SSF46689 | 1.88E-17 | 191 | 250 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-27 | 192 | 251 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-22 | 194 | 247 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-7 | 196 | 246 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MAADATVFPY GLRVLVVDDD PTWLKILEKM LRKCSYEVTT CGLARVALEI LRERKSKFDI 60 VISDVNMPDM DGFKLLEHIG LEMDLPVIMM SIDGETSRVM KGVQHGACDY LLKPVRMKEL 120 RNIWQHVYRK RMHEVKEIEG HDSCDDLQIL RYGFEGFDEK GIFITADSDT TRKRKDLDKD 180 HADQDSSDGA TAKKARVVWS VDLHQKFVNA VNQIGFDKVG PKKILDLMNV PGITRENVAS 240 HLQKYRLYLG RLQKQNEERI LGAARQDFSN KGTSENLNLR SSFQDQPSNV SSGYPHASQK 300 IQGQSSMLDS QLEDTKCTVP LPASDKSRNS VNDVADSQNV ADASPLSGVL SFKGLPVNQD 360 NNPSETMIME CQTWNGGVPS KQFMQYPKHN HARCDLLGDY ACLPKPDLEH PAAPGNFFTP 420 PPLISMSCSM ELDARNFSDV KPALLDCIKS LSPALTCTVD SVSVQLSDSV VTSTSSDRKF 480 STVEGLPYFD QTNSQGPLFR SQEPSTTCGL DLASLPEDLP SYPLQGVPFE NIGLSSIDLF 540 HYNDTMLLAG LQSNWYDDQE FISETTDYPL MDGCLFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-17 | 193 | 252 | 4 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g58020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564868.1 | 0.0 | two-component response regulator ORR26 isoform X1 | ||||
Swissprot | Q5N6V8 | 0.0 | ORR26_ORYSJ; Two-component response regulator ORR26 | ||||
TrEMBL | I1HUC7 | 0.0 | I1HUC7_BRADI; Two-component response regulator | ||||
STRING | BRADI2G58020.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5900 | 37 | 52 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-109 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g58020.1.p |
Entrez Gene | 100824670 |
Publications ? help Back to Top | |||
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