PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g57800.3.p | ||||||||
Common Name | BRADI_2g57800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 28166.3 Da PI: 6.5003 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.2e-12 | 195 | 240 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +++L Av+YIk Lq Bradi2g57800.3.p 195 SIAERERRTRISKRLRKLQDLVPNM----DKQTNTSDMLDIAVDYIKVLQ 240 689*********************7....688***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.903 | 189 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-15 | 192 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.13E-12 | 193 | 244 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.4E-15 | 194 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-11 | 195 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-9 | 195 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MHHCTCPGPD PIAPSNNGGM GNIGGYTHSQ AAGNVDAMAQ HRRLSSQWSF SRQQQDMIMP 60 QISEMGMALA TMPADIGESI ATGGNSSSDG AGGNAQSSSY GGGGLSRNFS MSSWDDTNSI 120 MFSSPARSSK KAKVMVDLDH ADDGMVTSFS NIDSQFGVSS SSLEMPGMDD YLQLQQDSVA 180 CRVRAKRGCA THPRSIAERE RRTRISKRLR KLQDLVPNMD KQTNTSDMLD IAVDYIKVLQ 240 DQIEKLKQDQ GNCSCPGNQN C* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g57800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564851.1 | 1e-180 | transcription factor bHLH128 | ||||
TrEMBL | A0A0Q3RD03 | 0.0 | A0A0Q3RD03_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G57800.1 | 1e-179 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 2e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g57800.3.p |