PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g57297.1.p
Common NameBRADI_2g57297, LOC100825714
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 414aa    MW: 44455.5 Da    PI: 9.2576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g57297.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.91e-49321572128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       +pGfrFhPt+eel+ +yL++kvegk++++ + i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +
  Bradi2g57297.1.p  32 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-DLITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRA 123
                       79***************************.99***************888889**************************************** PP

               NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++++ +glkktLvfy+g+apkg++++W+m+eyrl
  Bradi2g57297.1.p 124 ESSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 157
                       ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-5531177IPR003441NAC domain
PROSITE profilePS5100555.2131178IPR003441NAC domain
PfamPF023651.5E-2433157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSRYEGGGGH GAAAVGGGGG TKEDAHEQDL VMPGFRFHPT EEELIEFYLR RKVEGKRFNV  60
DLITFLDLYR YDPWELPAMA AIGEKEWFFY VPRDRKYRNG DRPNRVTASG YWKATGADRM  120
IRAESSRPIG LKKTLVFYSG KAPKGVRSSW IMNEYRLPTA DTHRYHKTEI SLCRVYKRTG  180
IDDGHSSSRS TPSSRAAAAT ARHDNNNNKQ AAAGNSSSTS TPTPPPTPSK LHLLQQGSPE  240
CTSPPPATIA TDHQARGHRT KPCGALSGYL QQSAAGDQQQ QDQGAALLHY QPQQYSGGKN  300
NTNNGAAFAS TTTYSLLSLV NAASMGAGGA SAAAIDELNT LVGGAQPAAS YHIPGTGSLL  360
HHDHFVVPLP TPTTAPLGTL PMSLAAISDK MIWDWNPIPD AAGTRDYGGA GFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-53191785165NO APICAL MERISTEM PROTEIN
1ut4_B2e-53191785165NO APICAL MERISTEM PROTEIN
1ut7_A2e-53191785165NO APICAL MERISTEM PROTEIN
1ut7_B2e-53191785165NO APICAL MERISTEM PROTEIN
4dul_A2e-53191785165NAC domain-containing protein 19
4dul_B2e-53191785165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g57297.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8197620.0FR819762.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC012 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232667.10.0NAC domain-containing protein 35 isoform X1
TrEMBLI1HU420.0I1HU42_BRADI; Uncharacterized protein
STRINGBRADI2G57297.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-101NAC domain containing protein 35