PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g57000.2.p | ||||||||
Common Name | BRADI_2g57000, LOC100823553 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 208aa MW: 23847.4 Da PI: 8.2555 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.6 | 1.9e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien nrqvtfskRr+gilKKA+E+SvLCdaev v+ifss gklye++s Bradi2g57000.2.p 9 KRIENPANRQVTFSKRRHGILKKAKEISVLCDAEVGVVIFSSAGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 77 | 4.9e-26 | 71 | 165 | 1 | 95 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yq +sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l+++ +k++e++ + i+ ++ e+e++ + Bradi2g57000.2.p 71 YQINSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTNVHEKQMEHWDRLIKSGKMLEDENKLLAFK 163 56678888*****************************************************************************99988888 PP K-box 94 Lr 95 L+ Bradi2g57000.2.p 164 LH 165 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.31 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-33 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.14E-40 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 9.0E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.9E-17 | 82 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.806 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MGRGKIEIKR IENPANRQVT FSKRRHGILK KAKEISVLCD AEVGVVIFSS AGKLYEFCSS 60 KTSLSRILEK YQINSGKILW DEKHKSLSAE IDRIKKENDN MQIELRHLKG EDLNSLQPKE 120 LIMIEEALDN GLTNVHEKQM EHWDRLIKSG KMLEDENKLL AFKLHDIALS GSLRDLELGY 180 HTERDFAAQM PITFRVQPSH PNLQENN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g57000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469315 | 0.0 | KF469315.1 Brachypodium distachyon MADS-box transcription factor 20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288308.1 | 1e-149 | MADS-box transcription factor 2-like | ||||
Swissprot | Q40702 | 1e-135 | MADS2_ORYSJ; MADS-box transcription factor 2 | ||||
TrEMBL | A0A2K2DGB2 | 1e-150 | A0A2K2DGB2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G57000.1 | 1e-149 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 9e-68 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g57000.2.p |
Entrez Gene | 100823553 |
Publications ? help Back to Top | |||
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