PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g56826.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 849aa    MW: 97313.8 Da    PI: 9.8778
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g56826.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.56.9e-11244318490
              FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       n Y+ evG++ +   +k        t ++ vC ++g++++++         +++ r+gCka++++ + +d+ w++++++leHnH+l+
  Bradi2g56826.1.p 244 NLYSWEVGYKCKSGPKKDV---VYQTLQHIVCGCKGYPRKKN---------TSSVRCGCKAMIRLLRIEDHGWYIKECKLEHNHNLS 318
                       5677777777777765555...33356778888888877654.........569*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-7267318IPR004330FAR1 DNA binding domain
PfamPF105511.3E-9435510IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MQARKKTRAM LSKDGPDGDA HHHLRCAVAG DETRGLPTPP LAASRADVLR WKLAVTISPP  60
RPPPDLPFPN SLGCSLRIGS DQFIEALRIV KLLPKSQRVF RIQELPGINP VIPVMDSSFP  120
GELSGSSPEA RSPPDQRAPK LVLESSGYRG WVGRDSPYTG AAAPTAQWGV SSRPAARWAL  180
ARGGQVRTRR AREPRKMTRL WVDERPGPFE NALRGFAQRS TAEILYPKIG LCFDSLAEAY  240
EYINLYSWEV GYKCKSGPKK DVVYQTLQHI VCGCKGYPRK KNTSSVRCGC KAMIRLLRIE  300
DHGWYIKECK LEHNHNLSRN NGEKMCWPSH KHIDRYTREL VRNLRENNVP LTKVCSILGT  360
YFGSTEDIPF NKRSLENLCK QISKEEANDD VRKTMDLFTK MRDEDPFFVY TADFDTDGRI  420
RNLIWVNGKS KMDYKCFGNA ITFIRLNNHF QSIIFSGVLM RQETIESFEW IFREFTSLMG  480
GKPLVTILTV AIERVLKNTT HRWCKWHVLK MAKERLGSVY TKYSNFKPEF HKLINYSITM  540
EEFEAAWEEL LGKYDLKEHH FLTPIYEARH RWAKPYFSGI FCAKMTSTQR SESANHMLKG  600
YVPPGAPMHL FVKQYNKLIA DRISKEDSEN QRTRMGVVVL KTGWPIEKHA ATVYTSAMLQ  660
LFSDHIFDSA AYNVIEVEVN KKYLTIHSDA ARREKWSKVN YEVTISDDGC MYKCHILKRW  720
TKDATDVLPD HLVHLQKDKG SARSQSYRHA TLHVAALELA AIGDKNVDCY HDVLKYMKDD  780
TKKFDAKKLA FTSSIMRLGH EPLRRKWRRP SHIESPGREL GSHKRHYICA LSFSSIQHTN  840
QFGGGSWI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g56826.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2504065e-38AK250406.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf76l04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169825.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2DG890.0A0A2K2DG89_BRADI; Uncharacterized protein
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-59FAR1-related sequence 5