PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g56320.1.p | ||||||||
Common Name | BRADI_2g56320, LOC100830806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 526aa MW: 57049.1 Da PI: 6.3876 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.4 | 1.4e-06 | 283 | 304 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H Bradi2g56320.1.p 283 FCVICGKGFKRDANLRMHMRGH 304 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.86E-5 | 280 | 307 | No hit | No description |
PROSITE profile | PS50157 | 11.614 | 282 | 309 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 282 | 304 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.6E-5 | 283 | 308 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 284 | 304 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 72 | 331 | 364 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 369 | 391 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MESGMRRSSE TSVKALSSMA SEASRNTDPG QQGLRFNSTD QSYFARAGQS IPVFPPFFGP 60 QSSSFCLPDG SGAKVGGQFE PNPSLNNPIS DWDPQAMLSN LSFLEQKIKQ VKDVVQSMSN 120 RGSQVVGGSG ELAAKQQLVT ADLTCIIIQL ISTAGSMLPS MKSPLLSSNP AVRQLSNTLG 180 SPMGFGSIAN QRPSINKEQT IPDITKTSDY EELMNTINTT HDGKDDLIKC PNPCVGEGSD 240 PIPFEDHDVK ESDDGGEGEN LPPGSYVVLQ LEKEEILAPH THFCVICGKG FKRDANLRMH 300 MRGHGDEYKT PAALAKPMKD SSSDHTPVTR YSCPFVGCKR NKEHRKFQPL KTILCVKNHY 360 KRSHCDKSYT CSRCNTKKFS VIADLKTHEK HCGRDKWLCS CGTTFSRKDK LFGHVALFQG 420 HTPALPMDDI KGTCVSDQPE GSEVMDDMVG STGYNFPGSA SDGIPNLDMK VADDVRGYFS 480 PLSFDPCFGA LDDFTRPGFD ISENPFSFLP SGPGSCSFGQ PSGDS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g56320.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564719.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Refseq | XP_024315785.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q943I6 | 0.0 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | I1HTT7 | 0.0 | I1HTT7_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G56320.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1512 | 38 | 111 | Representative plant | OGRP830 | 16 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-150 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g56320.1.p |
Entrez Gene | 100830806 |
Publications ? help Back to Top | |||
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