PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g56145.1.p
Common NameBRADI_2g56145, LOC100840520
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 378aa    MW: 39372.6 Da    PI: 6.5086
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g56145.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20148197255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Bradi2g56145.1.p 148 RYRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFDTAEAAARAYDEAALRFRG 197
                       7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-33148206IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22148206IPR016177DNA-binding domain
SMARTSM003801.3E-37148211IPR001471AP2/ERF domain
PROSITE profilePS5103225.712148205IPR001471AP2/ERF domain
PfamPF008473.4E-14148197IPR001471AP2/ERF domain
PRINTSPR003671.3E-11149160IPR001471AP2/ERF domain
CDDcd000187.46E-15156207No hitNo description
PRINTSPR003671.3E-11171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MCFELADPRG PHGGSPGKSG GDNSGASPAA MAMASPEELM SGYYQAQEMS TMVSALSRVV  60
ASDDPWAAEA SSWAAPASGA GGAGNAMHGA GRGGYYGQEQ GSFFRGAPSQ EFAGSDQSSD  120
TQSAATMEAE QHHHHHQQQA NPEAPRRRYR GVRQRPWGKW AAEIRDPHKA QRVWLGTFDT  180
AEAAARAYDE AALRFRGSRA KLNFPEDARL HPAPTTAAAA VNPPAQAPVA AAAASISAAA  240
TMYPGAAQTA DAYLRYQMLL QRSGVTINNQ GALVPLYGGG MAGSYGGGGA TSAGLGSYYS  300
FPSSSVSVAT VPSSSSASSA SGGQYYSSSH DSHHHHYQQH QQQQQGEAAA EWNWESALDY  360
PGTTASWSDS PPPPHNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22149205663ATERF1
3gcc_A3e-22149205663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g56145.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3549111e-85AK354911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1013E04.
GenBankAK3630781e-85AK363078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2012J04.
GenBankAK3658341e-85AK365834.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038B24.
GenBankAK3658781e-85AK365878.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038I11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567310.10.0ethylene-responsive transcription factor ABR1 isoform X1
TrEMBLA0A0Q3GK220.0A0A0Q3GK22_BRADI; Uncharacterized protein
STRINGBRADI2G56140.11e-180(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-14ethylene response factor 110