PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g55935.1.p

Common Name

BRADI_2g55935

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 584aa MW: 67321.5 Da PI: 7.6425

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g55935.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.1	1.9e-20	96	215	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................................tekerrtraetrtg 61 Yn+YA +vGFs+r s+s++s ++e+ k+ fvC+k k++ + + + ++rr+++ + t+ Bradi2g55935.1.p 96 HYNNYALRVGFSIRSSTSRRSLYTNEMEKQLFVCNKFRKPKADGEPtkkakvapdvssdskvgseeetdreedlpigkkAPNKRRRETIKGTN 188 6**********************************9999988778899***********************987888999999 PP FAR1 62 CkaklkvkkekdgkwevtkleleHnHel 89 Cka++ vk+ d++w+v+ + eHnH+l Bradi2g55935.1.p 189 CKARMIVKLL-DSRWQVIYFIAEHNHPL 215 ******.9************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-18	96	216	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MDLNELPTDL VDEGVATTGF PSYCTQPAPG KEVGEEVHNE VNAGSSHNGS MHITTSIPND 60 DDDINDEQFP EDEVLSQPHE PYLGMRFDTL LCAKDHYNNY ALRVGFSIRS STSRRSLYTN 120 EMEKQLFVCN KFRKPKADGE PTKKAKVAPD VSSDSKVGSE EETDREEDLP IGKKAPNKRR 180 RETIKGTNCK ARMIVKLLDS RWQVIYFIAE HNHPLIIKPS LTKYLRSHQG IPKEEENFLR 240 ILHDSNLETG RMMQLMSSFY GSGLLIPYTT KAISNYRGWA EMMETHQVAG NKYIAWLYNI 300 RATWVPCYFR NCFFPFLQST QRSEGINVVL KCYVNPHNSI LNFVHQHEKI QLKILVKEGG 360 NDYRTDHLHV DTWSSYPIEK QALEVYTRDI YYRFRSEFEM IGRYNVRPLQ NDIYELIPNR 420 KYCCNYGTRA YKVTDRVDEA SYSCECCKFQ KDRLLCCYIL KIFTHCSIDE IPQHYILKRC 480 TQQAIREEVA PEQDQPDVMP KELEKEIRLA NMSVELQKVA RKACGSDAAK QIVDKHVRTM 540 WTELSHLNKT RKPTKKTAAT APSPRASASV PLQPEVAPTV RNSE

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MDLNELPTDL VDEGVATTGF PSYCTQPAPG KEVGEEVHNE VNAGSSHNGS MHITTSIPND  60
DDDINDEQFP EDEVLSQPHE PYLGMRFDTL LCAKDHYNNY ALRVGFSIRS STSRRSLYTN  120
EMEKQLFVCN KFRKPKADGE PTKKAKVAPD VSSDSKVGSE EETDREEDLP IGKKAPNKRR  180
RETIKGTNCK ARMIVKLLDS RWQVIYFIAE HNHPLIIKPS LTKYLRSHQG IPKEEENFLR  240
ILHDSNLETG RMMQLMSSFY GSGLLIPYTT KAISNYRGWA EMMETHQVAG NKYIAWLYNI  300
RATWVPCYFR NCFFPFLQST QRSEGINVVL KCYVNPHNSI LNFVHQHEKI QLKILVKEGG  360
NDYRTDHLHV DTWSSYPIEK QALEVYTRDI YYRFRSEFEM IGRYNVRPLQ NDIYELIPNR  420
KYCCNYGTRA YKVTDRVDEA SYSCECCKFQ KDRLLCCYIL KIFTHCSIDE IPQHYILKRC  480
TQQAIREEVA PEQDQPDVMP KELEKEIRLA NMSVELQKVA RKACGSDAAK QIVDKHVRTM  540
WTELSHLNKT RKPTKKTAAT APSPRASASV PLQPEVAPTV RNSE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g55935.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155267.1	1e-152	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0Q3GI11	0.0	A0A0Q3GI11_BRADI; Uncharacterized protein (Fragment)
STRING	BRADI1G10750.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2639	10	18
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-23	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi2g55935.1.p