PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g55780.1.p | ||||||||
Common Name | BRADI_2g55780, LOC100834788 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 267aa MW: 28817 Da PI: 5.0452 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.4 | 4.4e-43 | 7 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppG+rF Pt+eel+++yL++k+++++ ++e+vi+ v++y+v+Pw+L + +e + w++F+ r++++a+g r++r+t sgyWka g Bradi2g55780.1.p 7 LPPGYRFYPTEEELICFYLRNKLDSRRDDIERVIPVVEVYSVDPWQLSEiharlcGGGSEGEPWFYFCARQEREARGGRPSRTTPSGYWKAAG 99 79****************************99***************8445655422336679****************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + v+s+ +++ +g++kt+vfy+grap+g+kt+W m+eyr+ Bradi2g55780.1.p 100 TPGVVYSAsGRRPIGMRKTMVFYRGRAPSGSKTKWKMNEYRA 141 ******9967778***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-47 | 4 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.216 | 7 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-24 | 8 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MADGVQLPPG YRFYPTEEEL ICFYLRNKLD SRRDDIERVI PVVEVYSVDP WQLSEIHARL 60 CGGGSEGEPW FYFCARQERE ARGGRPSRTT PSGYWKAAGT PGVVYSASGR RPIGMRKTMV 120 FYRGRAPSGS KTKWKMNEYR ALQHHDDEAN AGAGAAATEP AVAPPSNHLP PQLRSEFSLC 180 RLYTKSGTLR QFDRRPLAAD AAGGGAGDNP GPSTAAAVSP DDDDGGSGGS MQPLEEAELM 240 EGGGRGDPYG DDDVATLAAL LYWPAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-28 | 5 | 191 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-28 | 5 | 191 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-28 | 5 | 191 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-28 | 5 | 191 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-28 | 5 | 191 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-28 | 5 | 191 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-28 | 5 | 191 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-28 | 5 | 191 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-28 | 5 | 191 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-28 | 5 | 191 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-28 | 5 | 191 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-28 | 5 | 191 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-28 | 5 | 191 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-28 | 5 | 191 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g55780.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567294.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-62 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | I1HTN2 | 0.0 | I1HTN2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G55780.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-63 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g55780.1.p |
Entrez Gene | 100834788 |
Publications ? help Back to Top | |||
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