PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g55780.1.p

Common Name

BRADI_2g55780, LOC100834788

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 267aa MW: 28817 Da PI: 5.0452

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g55780.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.4	4.4e-43	7	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppG+rF Pt+eel+++yL++k+++++ ++e+vi+ v++y+v+Pw+L + +e + w++F+ r++++a+g r++r+t sgyWka g Bradi2g55780.1.p 7 LPPGYRFYPTEEELICFYLRNKLDSRRDDIERVIPVVEVYSVDPWQLSEiharlcGGGSEGEPWFYFCARQEREARGGRPSRTTPSGYWKAAG 99 79**************************99***********8445655422336679************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + v+s+ +++ +g++kt+vfy+grap+g+kt+W m+eyr+ Bradi2g55780.1.p 100 TPGVVYSAsGRRPIGMRKTMVFYRGRAPSGSKTKWKMNEYRA 141 **9967778*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-47	4	185	IPR003441	NAC domain
PROSITE profile	PS51005	47.216	7	185	IPR003441	NAC domain
Pfam	PF02365	9.1E-24	8	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MADGVQLPPG YRFYPTEEEL ICFYLRNKLD SRRDDIERVI PVVEVYSVDP WQLSEIHARL 60 CGGGSEGEPW FYFCARQERE ARGGRPSRTT PSGYWKAAGT PGVVYSASGR RPIGMRKTMV 120 FYRGRAPSGS KTKWKMNEYR ALQHHDDEAN AGAGAAATEP AVAPPSNHLP PQLRSEFSLC 180 RLYTKSGTLR QFDRRPLAAD AAGGGAGDNP GPSTAAAVSP DDDDGGSGGS MQPLEEAELM 240 EGGGRGDPYG DDDVATLAAL LYWPAD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-28	5	191	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-28	5	191	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-28	5	191	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-28	5	191	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-28	5	191	18	174	NAC domain-containing protein 19
3swm_B	5e-28	5	191	18	174	NAC domain-containing protein 19
3swm_C	5e-28	5	191	18	174	NAC domain-containing protein 19
3swm_D	5e-28	5	191	18	174	NAC domain-containing protein 19
3swp_A	5e-28	5	191	18	174	NAC domain-containing protein 19
3swp_B	5e-28	5	191	18	174	NAC domain-containing protein 19
3swp_C	5e-28	5	191	18	174	NAC domain-containing protein 19
3swp_D	5e-28	5	191	18	174	NAC domain-containing protein 19
4dul_A	5e-28	5	191	15	171	NAC domain-containing protein 19
4dul_B	5e-28	5	191	15	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g55780.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003567294.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-62	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	I1HTN2	0.0	I1HTN2_BRADI; Uncharacterized protein
STRING	BRADI2G55780.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140
Representative plant	OGRP2278	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-63	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Bradi2g55780.1.p
Entrez Gene	100834788

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]