PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g55567.9.p | ||||||||
Common Name | BRADI_2g55567, LOC100840197 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bZIP | ||||||||
Protein Properties | Length: 545aa MW: 59684 Da PI: 7.1075 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.2 | 2.3e-10 | 233 | 263 | 4 | 34 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k err+++NReAA++sR+RKka++++Le+ Bradi2g55567.9.p 233 SKTERRLAQNREAAKKSRLRKKAYVQNLETS 263 799*************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.7E-8 | 230 | 306 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.289 | 232 | 276 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.74E-7 | 233 | 277 | No hit | No description |
Pfam | PF00170 | 3.6E-7 | 234 | 268 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-7 | 234 | 279 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 237 | 252 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 6.6E-29 | 315 | 389 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MVQGEESSWR MASAHDHERA AVHLNQAALP YHGGVQAHAS AALPASFLDF QPAAAAAAYF 60 GELEEALIHG AANAGGVGHH PGSMITSDMH SAKSAAAGYL AARPPTLEIF PSWPMRHQQQ 120 LHSGNSQQSV GSTTDSSSAR NTMAQMELVS PGPASSIRPS PPSSSEQQPQ QQRQEVMMVT 180 TDDYSYKPAF APPPATLAAA PSFQQQLQLP LHGGDHDKRK HGLARKDGKL VDSKTERRLA 240 QNREAAKKSR LRKKAYVQNL ETSRVRLQQM EQELQRARSQ GTFLGGCSGS GDLSSGAAVF 300 DMEYARWLDD DGKRLAELRG ALQAHLVDGN LGLIVEECMR HYDELFGLKE ELARSDVFHL 360 LTGSWATPAE RCFFWIGGFR PSDILKILIQ QLDPLTEQQL MGIYGLKQSS EQAEEALAQG 420 LQQLHQSLAD TVAAGTLNEG AAVPNYMGLM AIALDKLASL EGFYQQADNL RKQTLHQMRR 480 ILTTRQAARC FLSIGEYYRR LRALSNLWAS RPRENFIGTD SLSPTGTELQ GLHHQPQQNQ 540 FSGF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g55567.9.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366398 | 0.0 | AK366398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042K16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014754949.1 | 0.0 | transcription factor LG2 isoform X1 | ||||
Refseq | XP_014754950.1 | 0.0 | transcription factor LG2 isoform X1 | ||||
Refseq | XP_014754951.1 | 0.0 | transcription factor LG2 isoform X1 | ||||
Swissprot | Q5N7C7 | 0.0 | LG2_ORYSJ; Transcription factor LG2 | ||||
TrEMBL | I1HTK9 | 0.0 | I1HTK9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G55567.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-119 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g55567.9.p |
Entrez Gene | 100840197 |
Publications ? help Back to Top | |||
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