PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g55567.6.p

Common Name

BRADI_2g55567

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 543aa MW: 59541.9 Da PI: 7.1075

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g55567.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.2	2.3e-10	231	261	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k err+++NReAA++sR+RKka++++Le+ Bradi2g55567.6.p 231 SKTERRLAQNREAAKKSRLRKKAYVQNLETS 261 799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-8	228	304	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	230	274	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-7	231	275	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-7	232	277	No hit	No description
Pfam	PF00170	3.6E-7	232	266	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	235	250	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.5E-29	313	387	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MVQGEESSWR MASAHDHERA AVHLNQAALP YHGGVQAHAS AALPASFLDF QPAAAAAAYF 60 GELEEALIHG AANAGGVGHH PGSMITSDMH SAKSAGYLAA RPPTLEIFPS WPMRHQQQLH 120 SGNSQQSVGS TTDSSSARNT MAQMELVSPG PASSIRPSPP SSSEQQPQQQ RQEVMMVTTD 180 DYSYKPAFAP PPATLAAAPS FQQQLQLPLH GGDHDKRKHG LARKDGKLVD SKTERRLAQN 240 REAAKKSRLR KKAYVQNLET SRVRLQQMEQ ELQRARSQGT FLGGCSGSGD LSSGAAVFDM 300 EYARWLDDDG KRLAELRGAL QAHLVDGNLG LIVEECMRHY DELFGLKEEL ARSDVFHLLT 360 GSWATPAERC FFWIGGFRPS DILKILIQQL DPLTEQQLMG IYGLKQSSEQ AEEALAQGLQ 420 QLHQSLADTV AAGTLNEGAA VPNYMGLMAI ALDKLASLEG FYQQADNLRK QTLHQMRRIL 480 TTRQAARCFL SIGEYYRRLR ALSNLWASRP RENFIGTDSL SPTGTELQGL HHQPQQNQFS 540 GF*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MVQGEESSWR MASAHDHERA AVHLNQAALP YHGGVQAHAS AALPASFLDF QPAAAAAAYF  60
GELEEALIHG AANAGGVGHH PGSMITSDMH SAKSAGYLAA RPPTLEIFPS WPMRHQQQLH  120
SGNSQQSVGS TTDSSSARNT MAQMELVSPG PASSIRPSPP SSSEQQPQQQ RQEVMMVTTD  180
DYSYKPAFAP PPATLAAAPS FQQQLQLPLH GGDHDKRKHG LARKDGKLVD SKTERRLAQN  240
REAAKKSRLR KKAYVQNLET SRVRLQQMEQ ELQRARSQGT FLGGCSGSGD LSSGAAVFDM  300
EYARWLDDDG KRLAELRGAL QAHLVDGNLG LIVEECMRHY DELFGLKEEL ARSDVFHLLT  360
GSWATPAERC FFWIGGFRPS DILKILIQQL DPLTEQQLMG IYGLKQSSEQ AEEALAQGLQ  420
QLHQSLADTV AAGTLNEGAA VPNYMGLMAI ALDKLASLEG FYQQADNLRK QTLHQMRRIL  480
TTRQAARCFL SIGEYYRRLR ALSNLWASRP RENFIGTDSL SPTGTELQGL HHQPQQNQFS  540
GF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g55567.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366398	0.0	AK366398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042K16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014754949.1	0.0	transcription factor LG2 isoform X1
Refseq	XP_014754950.1	0.0	transcription factor LG2 isoform X1
Refseq	XP_014754951.1	0.0	transcription factor LG2 isoform X1
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0Q3N231	0.0	A0A0Q3N231_BRADI; Uncharacterized protein
STRING	BRADI2G55567.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-119	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi2g55567.6.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]