PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g55567.2.p
Common NameBRADI_2g55567, LOC100840197
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 545aa    MW: 59684 Da    PI: 7.1075
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g55567.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-10233263434
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                       +k err+++NReAA++sR+RKka++++Le+ 
  Bradi2g55567.2.p 233 SKTERRLAQNREAAKKSRLRKKAYVQNLETS 263
                       799*************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-8230306IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289232276IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-7233277No hitNo description
PfamPF001703.6E-7234268IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-7234279No hitNo description
PROSITE patternPS000360237252IPR004827Basic-leucine zipper domain
PfamPF141446.6E-29315389IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MVQGEESSWR MASAHDHERA AVHLNQAALP YHGGVQAHAS AALPASFLDF QPAAAAAAYF  60
GELEEALIHG AANAGGVGHH PGSMITSDMH SAKSAAAGYL AARPPTLEIF PSWPMRHQQQ  120
LHSGNSQQSV GSTTDSSSAR NTMAQMELVS PGPASSIRPS PPSSSEQQPQ QQRQEVMMVT  180
TDDYSYKPAF APPPATLAAA PSFQQQLQLP LHGGDHDKRK HGLARKDGKL VDSKTERRLA  240
QNREAAKKSR LRKKAYVQNL ETSRVRLQQM EQELQRARSQ GTFLGGCSGS GDLSSGAAVF  300
DMEYARWLDD DGKRLAELRG ALQAHLVDGN LGLIVEECMR HYDELFGLKE ELARSDVFHL  360
LTGSWATPAE RCFFWIGGFR PSDILKILIQ QLDPLTEQQL MGIYGLKQSS EQAEEALAQG  420
LQQLHQSLAD TVAAGTLNEG AAVPNYMGLM AIALDKLASL EGFYQQADNL RKQTLHQMRR  480
ILTTRQAARC FLSIGEYYRR LRALSNLWAS RPRENFIGTD SLSPTGTELQ GLHHQPQQNQ  540
FSGF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g55567.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3663980.0AK366398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042K16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754949.10.0transcription factor LG2 isoform X1
RefseqXP_014754950.10.0transcription factor LG2 isoform X1
RefseqXP_014754951.10.0transcription factor LG2 isoform X1
SwissprotQ5N7C70.0LG2_ORYSJ; Transcription factor LG2
TrEMBLI1HTK90.0I1HTK9_BRADI; Uncharacterized protein
STRINGBRADI2G55567.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Representative plantOGRP1069649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-119bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]