PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g55540.1.p
Common NameBRADI_2g55540, LOC100839283
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 374aa    MW: 40557.6 Da    PI: 7.3009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g55540.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-05211230120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C+ C+k F+r  n++ H+
  Bradi2g55540.1.p 211 FVCHVCNKKFNRYNNMQMHM 230
                       89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-5207234No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5211230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.097211238IPR007087Zinc finger, C2H2
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
SuperFamilySSF576675.29E-5282318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGLRTCSAME GEVVAASPFI EWLKPPPPSS SSSSPSSSTF SSSSSSSAAS RHQNRASGEA  60
RGGAEEDGGS SSGMACLPLL RMLEEGRACD HREPPLKEEI MSSAGASGSV LGPGVDLNIG  120
LPVGESCADY TMELGEEEEE EDEEEWNPTA HGGCKVEGEE KEEQGEAVEG SDRNISMGEL  180
VGVTAAESGV AMSCRYWIPT PAQILVGPVQ FVCHVCNKKF NRYNNMQMHM WGHGREYRKG  240
PESLKGTAQS ATLALLKLPC YCCAAGCKSN VAHPRARPLK DFRTLQTHYK RKHGAKPFRC  300
RRCAKPFAVK GDWRTHEKNC GKRWFCACGS DFKHKRSLND HVRSFGAHHF PVVVEAASAA  360
APKAEDHIIR FQR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g55540.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643340.0AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564660.10.0protein TRANSPARENT TESTA 1
TrEMBLI1HTK60.0I1HTK6_BRADI; Uncharacterized protein
STRINGBRADI2G55540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.14e-90C2H2-like zinc finger protein