PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g55270.1.p
Common NameBRADI_2g55270, LOC100829284
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 212aa    MW: 24396.3 Da    PI: 8.8159
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g55270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-201172157
                      TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++ R+++t+eq+++L elF+   r+ps+e++++++++l    +++ ++V++WFqN++a+e++
  Bradi2g55270.1.p 11 KCGRWNPTAEQVKVLTELFRAgLRTPSTEQIQRISTHLgafgKVESKNVFYWFQNHKARERH 72
                      568*****************99**************************************95 PP
2Wus_type_Homeobox109.32.1e-351273364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       + RW+Pt+eQ+k+L+el+++GlrtP++e+iqri+++L ++Gk+e+kNVfyWFQN+kaRer++
   Bradi2g55270.1.p 12 CGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLGAFGKVESKNVFYWFQNHKARERHH 73
                       78**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.4E-41077IPR001356Homeobox domain
PfamPF000469.8E-181272IPR001356Homeobox domain
SuperFamilySSF466893.34E-121376IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-81471IPR009057Homeodomain-like
CDDcd000861.86E-41474No hitNo description
PROSITE profilePS5007110.1061873IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010078Biological Processmaintenance of root meristem identity
GO:1902459Biological Processpositive regulation of stem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEVLSGRVGV KCGRWNPTAE QVKVLTELFR AGLRTPSTEQ IQRISTHLGA FGKVESKNVF  60
YWFQNHKARE RHHHKKRRRV ASSSSDNSSA SNNNDEAADH GRSSAREDLL LQPPESKREA  120
RSYNHHRRPI MTYVGYVRDE VEQEVVMWER PTREVETLEL FPLKAAYDLE AADRLRYVRG  180
AGEQQCREIS FFDVANGRDP PLELRLCSFD I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17579KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:12904206}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g55270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0383711e-178KF038371.1 Aegilops speltoides isolate PI560752 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBankKF0383721e-178KF038372.1 Aegilops speltoides subsp. speltoides isolate PI560529 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754290.11e-157WUSCHEL-related homeobox 9
SwissprotQ8W0F11e-109WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBLI1HTH51e-156I1HTH5_BRADI; Uncharacterized protein
STRINGBRADI2G55270.11e-157(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94113643
Representative plantOGRP84061116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.11e-30WUSCHEL related homeobox 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.
    New Phytol., 2014. 201(1): p. 66-79
    [PMID:24020752]
  3. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  4. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  5. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]