PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g55217.1.p
Common NameBRADI_2g55217, LOC100830302
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 309aa    MW: 33360.1 Da    PI: 7.0511
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g55217.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.9e-14150194347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ l++++ k++G g+W+ I+r   + Rt+ q+ s+ qky
  Bradi2g55217.1.p 150 AWTEEEHRLFLKGLKKYGRGDWRNISRSYVTSRTPTQVASHAQKY 194
                       7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512935.8963791IPR017884SANT domain
SMARTSM007176.9E-43890IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-84094IPR009057Homeodomain-like
CDDcd001679.96E-54287No hitNo description
PROSITE profilePS5129421.36143199IPR017930Myb domain
SuperFamilySSF466898.61E-17145199IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17146197IPR006447Myb domain, plants
SMARTSM007174.9E-13147197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-12148196IPR009057Homeodomain-like
PfamPF002498.3E-12150194IPR001005SANT/Myb domain
CDDcd001671.21E-11150195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MMAEAWTDVL LPPASFFSAH PCNSWFAQAD RRGASGGGGG AWTAEENKVF EEALAAIDLG  60
APDGWEMVAL MLPEKTVAEV VSHFRALEND VGFIEAGLVP FPRYDHDHDA SPPSSAGFTL  120
DWDDGGGFRG RGYFLRRGGR ADKERKKGVA WTEEEHRLFL KGLKKYGRGD WRNISRSYVT  180
SRTPTQVASH AQKYFNRLSS SGGGGKDGKR RASIHDITIV NLPDDDHGHG STSPSALTTA  240
SDGQFGAHVD AKPSSLSPPS LGRHRHFLPP GTIISSHHPY GSVKLEQQSS FMAGSTGLDL  300
LQMQCGQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1333104273RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g55217.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564630.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-62DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0Q3IY630.0A0A0Q3IY63_BRADI; Uncharacterized protein
STRINGBRADI2G55217.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.17e-61MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]