PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g54791.1.p | ||||||||
Common Name | BRADI_2g54791, LOC100824981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 234aa MW: 24884 Da PI: 7.2154 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.3 | 4.1e-29 | 127 | 180 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt+eLH+rFveav++L G++ A+Pk+i++lm+v+gLt+e+v+SHLQkYRl Bradi2g54791.1.p 127 KARMVWTTELHRRFVEAVAHL-GEKGAVPKAIVRLMNVDGLTRENVASHLQKYRL 180 68*******************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.754 | 124 | 183 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-29 | 125 | 185 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.64E-20 | 125 | 184 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-25 | 127 | 180 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-9 | 129 | 179 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MLSPRVVRPQ PHAGAASGGS SSSRRHMVDA EAAAAAGACG RVPEWELGLP SAAELTPVSQ 60 PLIPPALAAA FGIDLAGLPP TSVDARLLQD SPTSHLYSRF DEFDEEDEEG EGETEGAATG 120 GGRRGKKARM VWTTELHRRF VEAVAHLGEK GAVPKAIVRL MNVDGLTREN VASHLQKYRL 180 YLKRLHTGGA AAATPPPQVP PPYYSRFDAK PPQDAANRNG LRTFISYDKL GCD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-25 | 127 | 183 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g54791.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-109 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567265.2 | 1e-170 | transcription factor PCL1 | ||||
Swissprot | Q9LTH4 | 2e-36 | PCLL_ARATH; Transcription factor BOA | ||||
TrEMBL | A0A0Q3GJF8 | 1e-168 | A0A0Q3GJF8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G54787.1 | 1e-167 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 | Representative plant | OGRP1157 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59570.1 | 6e-34 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g54791.1.p |
Entrez Gene | 100824981 |
Publications ? help Back to Top | |||
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