PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g54720.2.p | ||||||||
Common Name | BRADI_2g54720, LOC100824067 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 335aa MW: 35679.2 Da PI: 6.229 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.8 | 1.7e-31 | 138 | 194 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 Dgy+WrKYGqK++k++++prsYY+Cts++C++kk+ve+s++dp+++++tYeg H h Bradi2g54720.2.p 138 TDGYKWRKYGQKSIKNNPHPRSYYKCTSSRCSAKKHVEKSTHDPEMFTVTYEGLHLH 194 6******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.9E-30 | 131 | 195 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.473 | 132 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-26 | 135 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-35 | 137 | 196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 139 | 194 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGDVLQAEAV APAADEAGIW PGELDEQLIS DLLSDDSLLA PVVDPADDSE QHYCPRDNTG 60 SGAATAAVPP AEAGRSLCSV YSGPTITDIQ KALSSRPHPP RYGRRYSSLY FRRYGAASAA 120 PESRRTATVR SCGGKMPTDG YKWRKYGQKS IKNNPHPRSY YKCTSSRCSA KKHVEKSTHD 180 PEMFTVTYEG LHLHGPQPLS RHLQPPPGPT TTDVAVVNKK ARLSPNSDDN HGDDDSGAGI 240 GCGARWPSKE TCGVDDDDDV GGGGSSKLQG RQKGRAHDAV IAVDSSDGRW SAASSVPHAD 300 DAAAAVFSSD PPPAANWYCL DLPWSPEGHF PWTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-19 | 136 | 194 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g54720.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101616 | 1e-104 | FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014753904.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
TrEMBL | A0A0Q3GJF3 | 0.0 | A0A0Q3GJF3_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G54720.1 | 1e-175 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 8e-27 | WRKY DNA-binding protein 49 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g54720.2.p |
Entrez Gene | 100824067 |