PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g54640.1.p | ||||||||
Common Name | BRADI_2g54640, LOC100843336 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 571aa MW: 62477.1 Da PI: 7.7932 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.6e-17 | 64 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+ ++ Rt+ qc +rwqk+l Bradi2g54640.1.p 64 KGGWTPQEDETLRKAVQAFKGRSWKKIAEFFP-DRTEVQCLHRWQKVL 110 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.3 | 2.1e-19 | 116 | 162 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++ +vk++G+ W+ Iar ++ gR +kqc++rw+++l Bradi2g54640.1.p 116 KGPWTQEEDDKIIALVKEYGPTKWSVIARSLP-GRIGKQCRERWHNHL 162 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 57.5 | 3.1e-18 | 168 | 210 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l++a++ +G++ W+ Ia+ ++ gRt++++k++w+ Bradi2g54640.1.p 168 KDAWTAEEERALINAHQTYGNK-WAEIAKVLP-GRTDNSIKNHWN 210 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.651 | 59 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 63 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 64 | 110 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.16E-15 | 65 | 120 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.8E-23 | 66 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.09E-13 | 67 | 110 | No hit | No description |
PROSITE profile | PS51294 | 31.526 | 111 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.29E-32 | 113 | 209 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-18 | 115 | 164 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-18 | 116 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.85E-16 | 118 | 162 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-27 | 127 | 170 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-18 | 167 | 215 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.611 | 167 | 217 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.5E-16 | 168 | 211 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-14 | 170 | 210 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 171 | 217 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MRAMAEVEHE GCVENRQPLA ASSSSVSDGS SYGVGLARMS PPVSSSVNSI SGLRRTSGPI 60 RRAKGGWTPQ EDETLRKAVQ AFKGRSWKKI AEFFPDRTEV QCLHRWQKVL NPELIKGPWT 120 QEEDDKIIAL VKEYGPTKWS VIARSLPGRI GKQCRERWHN HLNPDIKKDA WTAEEERALI 180 NAHQTYGNKW AEIAKVLPGR TDNSIKNHWN SSVRKKLDVY STSKILAVPR LVGHNDFKDK 240 PKPVANEGHL DLNKVAIVSS KDIPETAQRS NLNHVNDCSG FLSLSILPTD QPLTSYEVSS 300 VVDGSAVTLA VQGLESDSVR EKGLEILSVH EKGLEADSTL DTLAESGTTQ LESVPAKGEE 360 PSLKNEAQSS LGPLCYQIPN MEDVAPVTSP LFSEHHTMHQ TSEHCRDVVL SPNGCTTPAK 420 GTISSQLSVD SILKSAADSF PSTPSILRRR KRDKSTPASD LRFGGLNTDS FYTPAGKRPT 480 TDTPESFKTA SFLSLGSLDQ LSASVRSFDV SPPYRIRSKR TAVTRTVEKQ LDFSADELGT 540 CGSKILDSPC QNSLNTNSFT DAPMMEGNKT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-73 | 63 | 217 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-73 | 63 | 217 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 448 | 453 | RRKRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g54640.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ236494 | 0.0 | HQ236494.1 Triticum aestivum MYB3R transcription factor (MYB3R1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232544.2 | 0.0 | transcription factor MYB3R-2 | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | I1HT97 | 0.0 | I1HT97_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G54640.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-106 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g54640.1.p |
Entrez Gene | 100843336 |
Publications ? help Back to Top | |||
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