PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g54470.1.p | ||||||||
Common Name | BRADI_2g54470, LOC100822222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 203aa MW: 21871.2 Da PI: 9.0135 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0018 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Bradi2g54470.1.p 43 FECKTCSRQFPTFQALGGHRASH 65 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00094 | 112 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F L H+r+H Bradi2g54470.1.p 112 HECPVCGLEFAVGQALGGHMRRH 134 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.07E-8 | 41 | 65 | No hit | No description |
Pfam | PF13912 | 1.5E-12 | 42 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.723 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.07E-8 | 107 | 134 | No hit | No description |
Pfam | PF13912 | 4.0E-10 | 111 | 137 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 112 | 134 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.93 | 112 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MSKRGRGVWE MDTARVLMLL AQHHQHQQQQ QQQAPLAMRG RVFECKTCSR QFPTFQALGG 60 HRASHKRPRL LQQQQQPQNA LVNDAAALCL GRQITLPRQP QQMPVPAKPR AHECPVCGLE 120 FAVGQALGGH MRRHRAEADA PTSGCKAAAP ETPTACCDAD GGICLDLNLT PSENCAKCRS 180 VAAGLGARQG VPKALAMLDC SL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g54470.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ244241 | 3e-36 | DQ244241.1 Zea mays clone 3770 mRNA sequence. | |||
GenBank | EU970219 | 3e-36 | EU970219.1 Zea mays clone 342364 zinc finger, C2H2 type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567257.1 | 1e-145 | zinc finger protein ZAT12 | ||||
TrEMBL | I1HT76 | 1e-143 | I1HT76_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G54470.1 | 1e-144 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6282 | 21 | 38 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 7e-29 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g54470.1.p |
Entrez Gene | 100822222 |