PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g53760.1.p | ||||||||
Common Name | BRADI_2g53760, LOC100845575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 577aa MW: 61163.6 Da PI: 7.075 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.2 | 3e-32 | 229 | 285 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve+s +++++ei+Y+g+Hnh Bradi2g53760.1.p 229 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVETSL-EGQITEIVYKGTHNHA 285 8****************************************.***************7 PP | |||||||
2 | WRKY | 105.5 | 2.7e-33 | 397 | 455 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+ Bradi2g53760.1.p 397 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASQDLRAVITTYEGKHNHD 455 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-27 | 220 | 287 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-24 | 222 | 287 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.171 | 223 | 287 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-34 | 228 | 286 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-24 | 229 | 284 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.1E-37 | 382 | 457 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-29 | 389 | 457 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.17 | 392 | 457 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-38 | 397 | 456 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 398 | 455 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MTTSSSGSIE TSANSRPGSF SFANASFTDI LGGSAGGGSA SGGYKAMTPP SLPLSPSLMS 60 PSSYFNMPAG MNLADFLDSP VLLTSSIFPS PTTGAFASQQ FNWRPEAPVP SAEQGGKDEQ 120 QRQSAYSDFS FQTALQGKNE EQAAQTTTTT FQPPVPLAPQ QGEEAYRGQQ QQPWGGYQQP 180 AAAGMEASAN NPASFTAAPP LQATSSEMAP HAQGGGAYRQ THSQRRSSDD GYNWRKYGQK 240 QVKGSENPRS YYKCTFPSCP TKKKVETSLE GQITEIVYKG THNHAKPLNT RRSSGAGGAA 300 AQVLQSGAGG DTSEHSFGGG VSGGAHVTTP ENSSASFGDD EIGGASSPRA GNDLDDDEPD 360 SKRWRKDGDG EGIGVGGNRT VREPRVVVQT MSDIDILDDG YRWRKYGQKV VKGNPNPRSY 420 YKCTTVGCPV RKHVERASQD LRAVITTYEG KHNHDVPAAR GSAALYRPAP RPDMAAAAAS 480 SHFMANNQPP AMPYQLTTNN AGTQYAPRPD GFGGQSQGSF GFGGGFGFSG SGFDNPAGSY 540 MSQHQHQQRH NDAMHASAGA KEEPREDMFF QHPSQY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-36 | 220 | 458 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-36 | 220 | 458 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g53760.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564512.1 | 0.0 | WRKY transcription factor WRKY24 | ||||
Swissprot | Q6B6R4 | 0.0 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
TrEMBL | I1HSZ2 | 0.0 | I1HSZ2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G53760.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2992 | 36 | 87 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-97 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g53760.1.p |
Entrez Gene | 100845575 |
Publications ? help Back to Top | |||
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