PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g53495.1.p
Common NameBRADI_2g53495, LOC100840602
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 287aa    MW: 31847 Da    PI: 6.8711
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g53495.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.42.2e-2168128359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                       Dg+ WrKYGqK++k+s fpr YYrC+++   +C + k v++++ +dp ++++tY+ eH ++
  Bradi2g53495.1.p  68 DGHLWRKYGQKNIKDSAFPRLYYRCSYRedkRCLASKLVQQENcDDPPLFKVTYTYEHSCN 128
                       9**************************99889*******98754799***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-2155128IPR003657WRKY domain
SuperFamilySSF1182906.28E-2159129IPR003657WRKY domain
SMARTSM007743.1E-3166129IPR003657WRKY domain
PfamPF031062.6E-2268127IPR003657WRKY domain
PROSITE profilePS5081116.19168130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MASPRPKRES IDFEDPRAQE AMGSASASYS PPGAIFGLSP PDSSPRDNRK RRKDRPSWVK  60
HTFTPHFDGH LWRKYGQKNI KDSAFPRLYY RCSYREDKRC LASKLVQQEN CDDPPLFKVT  120
YTYEHSCNTA PVPTPDVVAQ LPPPPASGDS SLFVRFDSTG AAHSHSHGDT HRAMMMEQER  180
QRHYQSLPAP AWPSMMLSFD SSSSPSHHHE HHPAFLSAEL PPAASSSTSS SLFSTEAGLP  240
APSTTTTDGG DRFSTWDSLR YGLNDHVQFG DHVYLPDSGN AGDDHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-13681271068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853RKRRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g53495.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-39HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564497.10.0probable WRKY transcription factor 38
TrEMBLI1HSV90.0I1HSV9_BRADI; Uncharacterized protein
STRINGBRADI2G53495.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-16WRKY DNA-binding protein 46