PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g53390.3.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 324aa    MW: 35927.2 Da    PI: 8.4804
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g53390.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.6e-21143203257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       r+R+t+t+ ql++Le+ F + n +ps++++++++++l    +++e++V++WFqNrRa+ k+
  Bradi2g53390.3.p 143 RQRWTPTQMQLQILESIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 203
                       89*****************99**************************************97 PP
2Wus_type_Homeobox102.72.6e-33142205265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPt+ Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
   Bradi2g53390.3.p 142 ARQRWTPTQMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 205
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-17137208IPR009057Homeodomain-like
PROSITE profilePS5007114.819139204IPR001356Homeobox domain
SMARTSM003895.3E-14141208IPR001356Homeobox domain
SuperFamilySSF466898.98E-18142206IPR009057Homeodomain-like
PfamPF000465.5E-19143203IPR001356Homeobox domain
CDDcd000866.95E-13143205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALHLISRHA ATQAIRSNGR AGRGSAHVSK FRSSFSPEIL CASSRGRRGA MEWDKATAAA  60
VAVAGEQVDE RGGVEALGYV KVMTDEQMEV LRKQISIYAT ICEQLVEMHR ALTAHQDSIA  120
GMRLGNMYCD PLMVHGGHKI TARQRWTPTQ MQLQILESIF DQGNGTPSKQ KIKDITAELS  180
QHGQISETNV YNWFQNRRAR SKRKQAASLP NNAESEAEAD EESPTEKKPK SDGPLHQNMA  240
TRAHNPERIS EMHRHLDMEH EQNRGMMYGS NSDNSSKSSG GLGQMSFYAN VMSNPRIDQF  300
LGKVETPGSF SQFRPGESFD MYG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196204RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g53390.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564486.10.0WUSCHEL-related homeobox 8
SwissprotQ5QMM31e-143WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A2K2DFQ60.0A0A2K2DFQ6_BRADI; Uncharacterized protein
STRINGBRADI2G53390.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Representative plantOGRP18731639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-61WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]