PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g53390.2.p | ||||||||
Common Name | BRADI_2g53390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WOX | ||||||||
Protein Properties | Length: 206aa MW: 23123.7 Da PI: 7.8308 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.6 | 1.6e-21 | 25 | 85 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ Bradi2g53390.2.p 25 RQRWTPTQMQLQILESIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 85 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 103.8 | 1.1e-33 | 24 | 87 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq Bradi2g53390.2.p 24 ARQRWTPTQMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 87 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 19 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.819 | 21 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-14 | 23 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.81E-18 | 24 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.54E-13 | 25 | 87 | No hit | No description |
Pfam | PF00046 | 2.4E-19 | 25 | 85 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MGGMRLGNMY CDPLMVHGGH KITARQRWTP TQMQLQILES IFDQGNGTPS KQKIKDITAE 60 LSQHGQISET NVYNWFQNRR ARSKRKQAAS LPNNAESEAE ADEESPTEKK PKSDGPLHQN 120 MATRAHNPER ISEMHRHLDM EHEQNRGMMY GSNSDNSSKS SGGLGQMSFY ANVMSNPRID 180 QFLGKVETPG SFSQFRPGES FDMYG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 86 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g53390.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564486.1 | 1e-154 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 1e-106 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A0Q3KGU0 | 1e-153 | A0A0Q3KGU0_BRADI; Uncharacterized protein | ||||
TrEMBL | A0A2K2DFQ6 | 1e-152 | A0A2K2DFQ6_BRADI; Uncharacterized protein | ||||
TrEMBL | I1HSU6 | 1e-152 | I1HSU6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G53390.1 | 1e-153 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-38 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g53390.2.p |
Publications ? help Back to Top | |||
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