PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g53390.1.p | ||||||||
Common Name | BRADI_2g53390, LOC100837241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WOX | ||||||||
Protein Properties | Length: 274aa MW: 30624.2 Da PI: 6.3516 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.9 | 2.7e-21 | 93 | 153 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ Bradi2g53390.1.p 93 RQRWTPTQMQLQILESIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 153 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 103.1 | 1.9e-33 | 92 | 155 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq Bradi2g53390.1.p 92 ARQRWTPTQMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 155 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-17 | 87 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.819 | 89 | 154 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-14 | 91 | 158 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-18 | 92 | 156 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.1E-19 | 93 | 153 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.69E-13 | 93 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MEWDKATAAA VAVAGEQVDE RGGVEALGYV KVMTDEQMEV LRKQISIYAT ICEQLVEMHR 60 ALTAHQDSIA GMRLGNMYCD PLMVHGGHKI TARQRWTPTQ MQLQILESIF DQGNGTPSKQ 120 KIKDITAELS QHGQISETNV YNWFQNRRAR SKRKQAASLP NNAESEAEAD EESPTEKKPK 180 SDGPLHQNMA TRAHNPERIS EMHRHLDMEH EQNRGMMYGS NSDNSSKSSG GLGQMSFYAN 240 VMSNPRIDQF LGKVETPGSF SQFRPGESFD MYG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 154 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g53390.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564486.1 | 0.0 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 1e-144 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A2K2DFQ6 | 0.0 | A0A2K2DFQ6_BRADI; Uncharacterized protein | ||||
TrEMBL | I1HSU6 | 0.0 | I1HSU6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G53390.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-61 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g53390.1.p |
Entrez Gene | 100837241 |
Publications ? help Back to Top | |||
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