PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g53260.1.p
Common NameBRADI_2g53260, LOC100834178
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 311aa    MW: 34999.6 Da    PI: 7.5761
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g53260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.23.1e-53251531128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelvv+yL+++v+g++ ++  +i+evd+yk++PwdLp+++  +++ewyfF++rd+ky++g+r+nra+ sgyWkatg dk+v 
  Bradi2g53260.1.p  25 LPPGFRFHPTDEELVVHYLCRRVAGQPQPV-PIIAEVDLYKFNPWDLPERALFGRREWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPVS 116
                       79*************************999.88***************87778999************************************9 PP

               NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k  +g++vg+kk Lvfy+grap+g+ktdW+mheyrl
  Bradi2g53260.1.p 117 PKgsGGRTVGIKKALVFYSGRAPRGVKTDWIMHEYRL 153
                       99888999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-6521179IPR003441NAC domain
PROSITE profilePS5100562.41125179IPR003441NAC domain
PfamPF023651.3E-2726153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAMVKVESTA AEGSGRRDAE AELNLPPGFR FHPTDEELVV HYLCRRVAGQ PQPVPIIAEV  60
DLYKFNPWDL PERALFGRRE WYFFTPRDRK YPNGSRPNRA AGSGYWKATG ADKPVSPKGS  120
GGRTVGIKKA LVFYSGRAPR GVKTDWIMHE YRLAEADRSP AKKGCQKLDE WVLCRLYNKK  180
NNWEKVKVEQ HMAAVQRQNG EVMDAPIATD TMSDSFQTHD SEIDSASGLQ LHGFRDMVQG  240
QARDGIVTVK EDNDWFTDLN LDELQACYMN MQGQMVNPMA AATPGLDGNG YLQSMNSPHM  300
RMWQTILPPF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-95171857174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g53260.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9853290.0GQ985329.1 Triticum aestivum transcription factor TaNAC4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564478.10.0NAC domain-containing protein 68
SwissprotQ52QH41e-163NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLI1HSS70.0I1HSS7_BRADI; Uncharacterized protein
STRINGBRADI2G53260.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.12e-83NAC domain containing protein 102
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]