PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi2g52380.1.p | ||||||||
Common Name | BRADI_2g52380, LOC100827269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 18821.5 Da PI: 10.5716 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1e-19 | 28 | 78 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+ eAa a+++a++ l+g+ Bradi2g52380.1.p 28 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 78 7********.**********883....5*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.64E-31 | 27 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 28 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.944 | 28 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-22 | 28 | 86 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-12 | 28 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-35 | 28 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 175 aa Download sequence Send to blast |
MDPMLRGVAS LGGGGGGGAM TGEGEEAHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT 60 PVEAALAYDR AARTLRGAKA KTNFPDHQLQ VPHRRLPPLQ QHQRTVPFGG IDLSFPSPWH 120 FVYFSPLAAP LPQAASTPAV SAPPSTTLQL GIMGSRPGSL PFDLNEPPSL LFGS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 28 | 85 | 5 | 63 | ATERF1 |
3gcc_A | 2e-21 | 28 | 85 | 5 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi2g52380.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567200.2 | 1e-123 | ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A0Q3GGF1 | 1e-122 | A0A0Q3GGF1_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G52380.1 | 1e-120 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28360.1 | 3e-33 | ERF domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi2g52380.1.p |
Entrez Gene | 100827269 |