PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g52370.1.p | ||||||||
Common Name | BRADI_2g52370, LOC100834290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 25155.4 Da PI: 9.9138 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 33 | 84 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAa+a+++a+++++g+ Bradi2g52370.1.p 33 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDNAAREFRGA 84 68********.**********83...36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.02E-29 | 33 | 90 | No hit | No description |
Pfam | PF00847 | 3.9E-14 | 33 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-36 | 34 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-22 | 34 | 92 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.683 | 34 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 34 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAPRAAEKGA PEAPPTGLGL GVGGGVGGVA GGPHYRGVRK RPWGRYAAEI RDPAKKSRVW 60 LGTYDTAEEA ARAYDNAARE FRGAKAKTNF SFRSASPVIA GGGSPSSIST VESSGGGSAG 120 CVPRQAPMQA MPLPPTLDLD VFHRAAAMTA VPCGGMRFPF NGYPIARQTL HPYFFYEQAT 180 AAAAAAAGYR TLKMAQRVTV AAVAQSDSDS SSVVDLSPSP PAVTAHKAVA FDLDLNRPPP 240 AEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-22 | 30 | 96 | 1 | 68 | ATERF1 |
3gcc_A | 6e-22 | 30 | 96 | 1 | 68 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g52370.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564396.1 | 1e-175 | ethylene-responsive transcription factor 8 | ||||
TrEMBL | I1HSG8 | 1e-174 | I1HSG8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G52370.1 | 1e-174 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-23 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g52370.1.p |
Entrez Gene | 100834290 |