PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g50687.1.p
Common NameBRADI_2g50687, LOC100831334
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 295aa    MW: 31622 Da    PI: 7.674
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g50687.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.13.2e-3060144393
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaks 93 
                       g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ +++++++        + ++++  +++++s
  Bradi2g50687.1.p  60 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPHHGQ------QLNGADLMEHHMAS 144
                       78*****************************************************************9444......11111122222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.95161119IPR017887Transcription factor TCP subgroup
PfamPF036346.4E-2861157IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MMSGNQQQQS SSAVASAASE QEQQQQQAEL ARKHAAAVAT SRQWSAQTES RIVRVSRVFG  60
GKDRHSKVKT VKGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN AARHEIDKLP  120
PLQFPPHHGQ QLNGADLMEH HMASASMLPL MPHDFASALA ADHGGKGHAH DDVADMGRFA  180
AAGYHRFMGS NSSPLGLVNG GMPYNFTGES WNNNSTGGAH ENCQGSPHGG QVSIAAAHHS  240
AFPSLLSLAP RSHQLVYYAS EAAEQFPVDN NLGSQGLSLS SARAFHDHDH AAGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2066120155Putative transcription factor PCF6
5zkt_B3e-2066120155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g50687.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-105HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232377.10.0transcription factor TCP24
TrEMBLA0A0Q3N0980.0A0A0Q3N098_BRADI; Uncharacterized protein
STRINGBRADI2G50687.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5