PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g50540.3.p
Common NameBRADI_2g50540, LOC100826444
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 604aa    MW: 65943.4 Da    PI: 9.1873
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g50540.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.72.3e-13154193242
               TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                       +kk CnC++skClk+YCeCfa+g++C+  C+C++C+N+ e+
  Bradi2g50540.3.p 154 KKKCCNCRHSKCLKLYCECFASGVYCDG-CNCTNCFNNVEN 193
                       799*************************.********9875 PP
2TCR50.93.2e-16238277140
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Bradi2g50540.3.p 238 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 277
                       589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-15153193IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.747154278IPR005172CRC domain
PfamPF036381.7E-9155190IPR005172CRC domain
SMARTSM011148.4E-20238279IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12241276IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MAGKEQGGGG AGQPPRAPIP AVSTQPPIKK LVRQLDFTSA AFAGNPAMAA AAAAVTRTMQ  60
IRTVPVGYPQ PHQLRAGVPM GVPQQLQPRG LPVMRPHQVV HVPLPRPAMA VPVPQARPGQ  120
AQPVSRPPVA IPLRPESPKP RPRLYDGKDG TPTKKKCCNC RHSKCLKLYC ECFASGVYCD  180
GCNCTNCFNN VENEAARREA IDATLERNPD AFRPKIGSSP HANRNNMDVA GDLPLVGKHN  240
KGCHCKKSGC LKKYCECFQA NILCSENCKC MDCKNFEGSE ERKHLYLGDP KNLVHMHQVT  300
NAAVNGAIGA TSLLSPSTSR KRKQIDPLLD HPTKEHVVHK NGQLSQAIYQ KNAVAPDGSL  360
PISQSAHHNM MEPFKVTYRP LLADIIQPGD IRELCKLLVT VPREAAKAYA AGRKVQEEKV  420
AEKGDSLAST NHDREEKDKD QSHKKTSTDD RSSGGSHMGK ASVDDSRPDC TDDKKSCRPM  480
SPGTLALMCD EPDTMFAASQ NAIAEPTIGV NQNRSELYAE QERCVLTEFR DCLRKLVQYG  540
IMKEEKYRMA IRPEPTGHPG QVNSVQRRPY SKVDVPVVKT FPQSSSRHLV AGNPGSVNLD  600
KRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2915828914135Protein lin-54 homolog
5fd3_B2e-2915828914135Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318323SRKRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g50540.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232361.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A0Q3GFJ60.0A0A0Q3GFJ6_BRADI; Uncharacterized protein
STRINGBRADI2G50540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-137Tesmin/TSO1-like CXC domain-containing protein