PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g49020.1.p
Common NameBRADI_2g49020, LOC100839199
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 223aa    MW: 24758.9 Da    PI: 7.8231
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g49020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1054e-33143201159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK vk+s +prsYYrCt+++C++kk+v+r a+d+++v++tYeg+Hnh+
  Bradi2g49020.1.p 143 LDDGYRWRKYGQKAVKNSSNPRSYYRCTHPTCNMKKQVQRLAKDTDIVVTTYEGTHNHP 201
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-34129201IPR003657WRKY domain
SuperFamilySSF1182902.75E-28135202IPR003657WRKY domain
PROSITE profilePS5081128.805138203IPR003657WRKY domain
SMARTSM007745.0E-37143202IPR003657WRKY domain
PfamPF031065.5E-26144201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MDNLHGEDEA HTLPRFSDFS LPSTPPPASP LALPDDQQCP LAELQQPQPP PWCNPPLNCQ  60
MMMLPEMVDW SSLFQTPGPA APSERQEEAV QADQNGENDG EASSGGSGKE KAMGGAGRSG  120
KKKKKKVSKP RFAFQTRSEN DILDDGYRWR KYGQKAVKNS SNPRSYYRCT HPTCNMKKQV  180
QRLAKDTDIV VTTYEGTHNH PCDKLMEALG PILKQLQFLS RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-26133200774Probable WRKY transcription factor 4
2lex_A9e-26133200774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g49020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567084.21e-167WRKY transcription factor WRKY24
TrEMBLI1HR921e-166I1HR92_BRADI; Uncharacterized protein
STRINGBRADI2G49020.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.19e-52WRKY DNA-binding protein 24