PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi2g48690.1.p | ||||||||
Common Name | BRADI_2g48690, LOC100833578 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22381.7 Da PI: 8.5939 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.4 | 1.7e-22 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krien ++rq tf kRr g++KKA EL vLCda+ ++++fs +gkly y Bradi2g48690.1.p 9 KRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHY 57 79*********************************************99 PP | |||||||
2 | K-box | 27.9 | 9.5e-11 | 73 | 169 | 2 | 98 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 +++++++++ ++ + el+++ k + L++e+R + +d e+ ++ L Le++Le +++k+Rs K++ + ++++l ++ + q e L Bradi2g48690.1.p 73 EAATQTKVWCDIRQERRAELENVGKMCDLLEKELRFMTVDDGEQYTVPSLAALEHNLEAAMRKVRSEKDRKIGGEMSYLENMIRGKQAERYGL 165 5667778999999******************************************************************99999888888777 PP K-box 95 rkkl 98 kl Bradi2g48690.1.p 166 CDKL 169 7665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.357 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-27 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.0E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-12 | 85 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.039 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYHYLAP 60 TVPSVKEFVE RYEAATQTKV WCDIRQERRA ELENVGKMCD LLEKELRFMT VDDGEQYTVP 120 SLAALEHNLE AAMRKVRSEK DRKIGGEMSY LENMIRGKQA ERYGLCDKLA HAQSLKEVEG 180 GSTSLNNGLD LKLGFN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-14 | 1 | 80 | 1 | 84 | MEF2 CHIMERA |
6byy_B | 2e-14 | 1 | 80 | 1 | 84 | MEF2 CHIMERA |
6byy_C | 2e-14 | 1 | 80 | 1 | 84 | MEF2 CHIMERA |
6byy_D | 2e-14 | 1 | 80 | 1 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi2g48690.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF469314 | 0.0 | KF469314.1 Brachypodium distachyon MADS-box transcription factor 19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001288316.1 | 1e-144 | MADS-box transcription factor 32-like | ||||
Swissprot | Q8S151 | 1e-126 | MAD32_ORYSJ; MADS-box transcription factor 32 | ||||
TrEMBL | I1HR49 | 1e-142 | I1HR49_BRADI; MADS-box transcription factor 19 | ||||
STRING | BRADI2G48690.1 | 1e-143 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11923 | 34 | 39 | Representative plant | OGRP14358 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G20240.1 | 5e-22 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi2g48690.1.p |
Entrez Gene | 100833578 |
Publications ? help Back to Top | |||
---|---|---|---|
|