PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g48580.1.p
Common NameBRADI_2g48580, LOC100830619
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 385aa    MW: 42711.7 Da    PI: 10.1133
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g48580.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.43.1e-1920122299
                       EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvF 82 
                       fkvl     + ++rl +p +f++++            ++  +s+  tle +sgr+W v +  r++  + +++++GW +Fv+++ L+e Df+vF
  Bradi2g48580.1.p  20 FKVL--IGDF-QKRLKIPPNFCKHIpweastkakksLKEASSSMAATLEGPSGRTWPVVI--RRTAAEgTFFASGWTKFVQDQALRELDFLVF 107
                       5555..3344.457********888***9998877533334999****************..555444499********************** PP

                       EE-SSSEE..EEEEE-S CS
                B3  83 kldgrsefelvvkvfrk 99 
                       ++dg ++f    +vf+k
  Bradi2g48580.1.p 108 RHDGGTRF--AAMVFDK 122
                       *9886666..7777766 PP
2B353.44.6e-17284370598
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       +++ +v  s ++++p  f ++h   ++e  ++ l+d++g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+g  ef  +v++f
  Bradi2g48580.1.p 284 MSTMHVYYSFMMRFPTGFSRQHL--PRERAEMALRDPDGKAWAVLYI-PNTRDR--LSRGWCAFARGNCLEEGDCCVFELVGAAEF--RVHIF 369
                       6788999999*********9995..345569***************4.444455..9***********************997777..99999 PP

                       - CS
                B3  98 r 98 
                       r
  Bradi2g48580.1.p 370 R 370
                       8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-2015125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-1915127IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.60516123IPR003340B3 DNA binding domain
CDDcd100172.34E-1917121No hitNo description
PfamPF023622.5E-1619121IPR003340B3 DNA binding domain
SMARTSM010191.2E-1119123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-22272370IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-23273370IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-24278370No hitNo description
PROSITE profilePS5086313.874280372IPR003340B3 DNA binding domain
SMARTSM010191.1E-10280372IPR003340B3 DNA binding domain
PfamPF023624.6E-16282370IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MPDAEGQSPW ATGGRRPHFF KVLIGDFQKR LKIPPNFCKH IPWEASTKAK KSLKEASSSM  60
AATLEGPSGR TWPVVIRRTA AEGTFFASGW TKFVQDQALR ELDFLVFRHD GGTRFAAMVF  120
DKTACEREDL LRLGEDGPRK KRGRPRKASS RDDTVGKELV PYCGAPGDRQ PQVACPNSTV  180
ELGSAGQSIA AKTEADTDAH ALPLRSNAGP SQKRHGPDAD QDGCPAKTRS IQDDLAVAAG  240
IPPSVRRYNG YVSRRRPVTC AERQRATEIA RSFRSSLPHC VIRMSTMHVY YSFMMRFPTG  300
FSRQHLPRER AEMALRDPDG KAWAVLYIPN TRDRLSRGWC AFARGNCLEE GDCCVFELVG  360
AAEFRVHIFR VVEPPVPAVR LRIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g48580.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754273.10.0B3 domain-containing protein Os01g0723500
SwissprotQ8S2E61e-175Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A0Q3GE440.0A0A0Q3GE44_BRADI; Uncharacterized protein
STRINGBRADI2G48580.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-23B3 family protein