PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g48521.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 23708.9 Da PI: 11.7478 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l v+++ + +W t +++ g++R++k+c++rw++yl Bradi2g48521.1.p 14 RGPWSPEEDAVLRSFVQRFSNAgNWLTLPHKAGLNRCGKSCRLRWLNYL 62 89******************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 30.7 | 7e-10 | 69 | 107 | 2 | 42 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 g +T+eEd l++ + + G++ W+ Ia++++ Rt++++k+ Bradi2g48521.1.p 69 GGFTKEEDNLILSLYGEIGSK-WSVIAARLP-SRTGNDVKN 107 569******************.*********.********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.181 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.42E-25 | 12 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-12 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-21 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.58E-6 | 16 | 62 | No hit | No description |
PROSITE profile | PS50090 | 8.107 | 63 | 108 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.0E-6 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-9 | 69 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-17 | 70 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.25E-6 | 71 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGRSPCCDKG SVKRGPWSPE EDAVLRSFVQ RFSNAGNWLT LPHKAGLNRC GKSCRLRWLN 60 YLRPSLRHGG FTKEEDNLIL SLYGEIGSKW SVIAARLPSR TGNDVKNQST GTPSSRRGTC 120 SSQREQQRHL LLPATTASPP PTAPPWLMVN LFLLLRSSIL TQPLQRSTTA ESSRTSRSSC 180 TPSSWGSSSS SSPRPALARL QTGRPCCRNR HHRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 4e-18 | 14 | 133 | 2 | 115 | MYB3 |
3zqc_D | 4e-18 | 14 | 133 | 2 | 115 | MYB3 |
3zqc_G | 4e-18 | 14 | 133 | 2 | 115 | MYB3 |
3zqc_J | 4e-18 | 14 | 133 | 2 | 115 | MYB3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g48521.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241370 | 1e-109 | AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002456264.1 | 1e-66 | transcription factor MYB58 | ||||
Swissprot | Q9SJL7 | 1e-54 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A2K2DEP0 | 1e-152 | A0A2K2DEP0_BRADI; Uncharacterized protein | ||||
STRING | Sb03g033160.1 | 5e-66 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 4e-56 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g48521.1.p |
Publications ? help Back to Top | |||
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