PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g48320.1.p
Common NameBRADI_2g48320, LOC100826652
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 304aa    MW: 33817.8 Da    PI: 7.0395
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g48320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.45.6e-1158150185
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrt....sessstcpyfdq 84 
                       +Wt++ + aL++a  e+    +r++l +  W evs  +     r  g+  s  qC+++++ l+k ++k+ke+++  +     +s s+++yfd+
  Bradi2g48320.1.p  58 EWTEDSTFALLDAWGERFVCAGRRSLSADEWLEVSHLVaaaasRPAGY-YSEAQCRNRIDTLRKMFRKEKERSRLAAhrsnHPSPSNWVYFDK 149
                       5*************************************8886444444.4888******************9987531222566789*****9 PP

          trihelix  85 l 85 
                       +
  Bradi2g48320.1.p 150 M 150
                       9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-1457151No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDDPAAASLS SSPSSSDASP SPRSKRRRTD RYALGFEFAP RLTPSAAAPA PASRSASEWT  60
EDSTFALLDA WGERFVCAGR RSLSADEWLE VSHLVAAAAS RPAGYYSEAQ CRNRIDTLRK  120
MFRKEKERSR LAAHRSNHPS PSNWVYFDKM LSLMCPTPLP LLPRIVKRRR DRQPVPRYSW  180
GVDVGEFVLA GCGGAGSDAE LGGDVTGALK GEEFAVLTES IRRFGEVYER VESSKRQHMA  240
QLKRMRRDMQ RDLEVRWREI LEKAEMEIES IEEEEEGGDN AKKRLGDDDG GEKHNNGAVD  300
ASP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168RIVKRR
2235246RQHMAQLKRMRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g48320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753725.10.0trihelix transcription factor ASIL1
RefseqXP_014753726.10.0trihelix transcription factor ASIL1
TrEMBLI1HR030.0I1HR03_BRADI; Uncharacterized protein
STRINGBRADI2G48320.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-28Trihelix family protein