PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g48130.3.p | ||||||||
Common Name | BRADI_2g48130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 298aa MW: 33580.5 Da PI: 6.4258 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.5 | 2.6e-16 | 75 | 126 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t++eAa+a++ a+ +++g Bradi2g48130.3.p 75 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTEQEAARAYDIAAIEYRG 126 89****99**********99966...3.6**********99*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.891 | 1 | 40 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-10 | 3 | 41 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.7E-4 | 4 | 46 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-9 | 5 | 41 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-17 | 75 | 135 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.4E-12 | 75 | 126 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.04E-25 | 75 | 134 | No hit | No description |
SMART | SM00380 | 1.2E-24 | 76 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-17 | 76 | 134 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.769 | 76 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MFFNEKTVYL GAYDEEEAAA MAYDLAALKY WGPTTYTNFP VMNYEKELKI METLTKEEYL 60 ASLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYSTE QEAARAYDIA 120 AIEYRGINAV TNFDLRSYIT WLKPSVSDSS NVAGLAMPIP TENLFPRDTH IFSQHNPFIL 180 DHNTTQGSEE ATISPNFPRT RASSTALSLL FKSSMFRQLV EENSDATNKI RGNVREPVSK 240 PEANEYHSFF HGGTPDVLCL FSPTGVCSNS LDFQESIPYS GNHETVTWNG LPSMPEQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g48130.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808866.1 | 1e-119 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2K2DEM5 | 0.0 | A0A2K2DEM5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G48130.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 8e-56 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g48130.3.p |