PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi2g48130.2.p | ||||||||
Common Name | BRADI_2g48130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 393aa MW: 44320.6 Da PI: 9.7953 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.3 | 1.2e-15 | 68 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d ++n k+ k+++lg ++ +e Aa a++ a++k++g Bradi2g48130.2.p 68 SRFRGVSRHRWTGRFEAHLWDkNTWNPtqrKKgKQVYLGAYDEEEAAAMAYDLAALKYWG 127 789******************777755666447*************************98 PP | |||||||
2 | AP2 | 50.9 | 3.9e-16 | 170 | 221 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t++eAa+a++ a+ +++g Bradi2g48130.2.p 170 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTEQEAARAYDIAAIEYRG 221 89****99**********99966...3.6**********99*************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.1E-12 | 68 | 127 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-16 | 68 | 136 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.348 | 69 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-25 | 69 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-15 | 69 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-5 | 70 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-11 | 170 | 221 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-17 | 170 | 230 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.21E-24 | 170 | 229 | No hit | No description |
PROSITE profile | PS51032 | 18.769 | 171 | 229 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-24 | 171 | 235 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-17 | 171 | 229 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-5 | 211 | 231 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 393 aa Download sequence Send to blast |
MESTMIVKSE TNINPRLPAN TLTGASEVNH ASKVIKRRRR ETTSMATSRT NGSNLDKSTG 60 STTIKRSSRF RGVSRHRWTG RFEAHLWDKN TWNPTQRKKG KQVYLGAYDE EEAAAMAYDL 120 AALKYWGPTT YTNFPVMNYE KELKIMETLT KEEYLASLRR KSSGFSRGVS KYRGVARHHH 180 NGRWEARIGR VFGNKYLYLG TYSTEQEAAR AYDIAAIEYR GINAVTNFDL RSYITWLKPS 240 VSDSSNVAGL AMPIPTENLF PRDTHIFSQH NPFILDHNTT QGSEEATISP NFPRTRASST 300 ALSLLFKSSM FRQLVEENSD ATNKIRGNVR EPVSKPEANE YHSFFHGGTP DVLCLFSPTG 360 VCSNSLDFQE SIPYSGNHET VTWNGLPSMP EQ* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 93 | 101 | PTQRKKGKQ |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi2g48130.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808866.1 | 1e-154 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0Q3GDV9 | 0.0 | A0A0Q3GDV9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G48130.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4162 | 34 | 73 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54320.3 | 3e-80 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi2g48130.2.p |