PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g47887.2.p | ||||||||
Common Name | BRADI_2g47887, LOC100842650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 301aa MW: 31779.6 Da PI: 7.1164 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.5 | 7.4e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv++++ +G g+W++++r g+ R++k+c++rw +yl Bradi2g47887.2.p 14 RGLWSPEEDEKLVKYITTHGHGCWSSVPRQAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.7e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+ l++++++ lG++ W+ Ia++++ gRt++++k++w++ Bradi2g47887.2.p 67 RGSFSQEEEALIIELHRVLGNR-WAQIAKHLP-GRTDNEVKNFWNS 110 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.501 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.13E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.322 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.27E-13 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGHHSCCNKQ KVRRGLWSPE EDEKLVKYIT THGHGCWSSV PRQAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SQEEEALIIE LHRVLGNRWA QIAKHLPGRT DNEVKNFWNS TIKKKLISQA 120 VGSLHAGGIP SPADLYYNIL DGAAGQAGGI AAAGCPSLSG LDHNAAQGGV TQSSPPSGWA 180 NFTSHPLFLP GADHLQYAVD GDFVRLCRSA DAYPENGAAA AGLMAHEAAG GASANDDDDR 240 SCSLPVFVEP KAGAFSAGPA MGPVVDFMDA ILGSSSTSAA SASSVDSFSA NTGMQLHWIP 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g47887.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372926 | 0.0 | AK372926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3016B12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314192.1 | 0.0 | transcription factor MYB4 | ||||
TrEMBL | I1HQU8 | 0.0 | I1HQU8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G47887.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12813 | 30 | 35 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 2e-76 | myb domain protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g47887.2.p |
Entrez Gene | 100842650 |