PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g47820.2.p
Common NameBRADI_2g47820, LOC100839702
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 299aa    MW: 32983.7 Da    PI: 9.9485
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g47820.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.9e-12556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT eE+e l ++v ++G g W+tI +          R+  ++k++w+++
  Bradi2g47820.2.p  5 KQKWTSEEEEALRRGVVKHGAGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                      79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.467160IPR017930Myb domain
SuperFamilySSF466896.36E-16258IPR009057Homeodomain-like
SMARTSM007175.8E-8459IPR001005SANT/Myb domain
PfamPF002492.3E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-14556IPR009057Homeodomain-like
CDDcd116601.16E-20656No hitNo description
SuperFamilySSF466896.36E-16109150IPR009057Homeodomain-like
SMARTSM005262.2E-6111176IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150418.224113181IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.4E-11113187IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.9E-6115173IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRRGV VKHGAGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
NGLGSRDKIR VPRIKGPSSS SSPSPQLLLL PAPYNVAEAS PAEDPEKSPQ DDKTPSPNAM  120
ILEALAELNE PIGSEITTIY HYIEQRHEVQ PNFRRLLCAK LRRLIGAKKV EKIDKAYKLT  180
DSYAKKALAP MKDSSLKKKD PAKPSKASKN LSPGVEAAGA AAMKLVDAEA KAHLAKDHMV  240
EAARISRMAE DTESLLMLAT ELYERCSRGE MITMLQVAAQ REDQTHQSHA NIRSFVHG*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g47820.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569651.20.0glycylpeptide N-tetradecanoyltransferase 1
SwissprotQ6WLH41e-110SMH3_MAIZE; Single myb histone 3
TrEMBLA0A0Q3IUL00.0A0A0Q3IUL0_BRADI; Uncharacterized protein
STRINGBRADI2G47820.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-54MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]