PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g47367.1.p | ||||||||
Common Name | BRADI_2g47367, LOC100842335 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 28373.7 Da PI: 5.2193 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.2e-18 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdellv+ v++ G g+W+t +r+ g+ R++k+c++rw +yl Bradi2g47367.1.p 29 RGPWTAEEDELLVRFVEREGEGRWRTLPRRAGLLRCGKSCRLRWMNYL 76 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.3e-14 | 87 | 127 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +E++l++++++ lG++ W++Ia +++ gRt++++k++w+++l Bradi2g47367.1.p 87 DDEEDLILRLHRVLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 127 68***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.025 | 24 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.48E-29 | 27 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-22 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.00E-12 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 24.056 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-13 | 81 | 129 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-24 | 84 | 132 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-12 | 87 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.57E-11 | 87 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MARRKPPSQR GARRSAEGQS QSETATLKRG PWTAEEDELL VRFVEREGEG RWRTLPRRAG 60 LLRCGKSCRL RWMNYLRPDI KREPIADDEE DLILRLHRVL GNRWSLIAGR LPGRTDNEIK 120 NYWNSHLSKK LIAQGLDPRT HMPLAPADNA AAVVGPPDPA LPAQPTTAPS GAAGIGSGDS 180 TRASAAERGD DDQDQLAATM SLDDAAAQPL GFEGFADQFF AEHHAARGGF DDMGCAMVDA 240 DDAFALFLDS LVNESQFVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 27 | 131 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g47367.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376562 | 1e-149 | AK376562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3127N16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567025.1 | 0.0 | transcription repressor MYB5 | ||||
Swissprot | Q38850 | 3e-71 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | I1HQN4 | 0.0 | I1HQN4_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G47367.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-71 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g47367.1.p |
Entrez Gene | 100842335 |
Publications ? help Back to Top | |||
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