PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g47220.1.p
Common NameBRADI_2g47220, LOC100824693
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family RAV
Protein Properties Length: 404aa    MW: 42579 Da    PI: 9.8411
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g47220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.94.4e-1273121155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  Bradi2g47220.1.p  73 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEADAARAYDVAAQRFRG 121
                       89****9888.8*********......44**********99*************98 PP
2B3941.1e-29215312185
                       EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                       f+k+ tpsdv+k++rlv+pk++ae+h             gg++ ++  l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v
  Bradi2g47220.1.p 215 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaaaaaggGGESCKGLLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVV 307
                       89****************************99999999877777999********************************************** PP

                       EEEE- CS
                B3  81 vFkld 85 
                        F+++
  Bradi2g47220.1.p 308 GFYRS 312
                       **954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-2373129No hitNo description
SuperFamilySSF541713.14E-1673129IPR016177DNA-binding domain
PfamPF008476.3E-873121IPR001471AP2/ERF domain
SMARTSM003801.5E-2774135IPR001471AP2/ERF domain
PROSITE profilePS5103219.62574129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1974129IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.7E-38206331IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-28213324No hitNo description
SuperFamilySSF1019362.35E-28213312IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.689215330IPR003340B3 DNA binding domain
SMARTSM010191.6E-20215329IPR003340B3 DNA binding domain
PfamPF023623.3E-26215312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDSSSCLADE TNSGGASTDK LKALVAAATA TAPLERMGSG ASAVLDAAEP GAEADSGRVV  60
QQGAGVGGKL PSSKYKGVVP QPNGRWGAQI YERHQRVWLG TFAGEADAAR AYDVAAQRFR  120
GRDAVTNFRP LSESSPDPAD AAELRFLASR SKAEVVDMLR KHTYFDELAQ SRRAFAAAAA  180
SVPTIASRHN GQHSSPSPFP AAAAAAAAAA REHLFDKTVT PSDVGKLNRL VIPKQHAEKH  240
FPLQLPAAAA AGGGGESCKG LLLNFEDAGG KVWRFRYSYW NSSQSYVLTK GWSRFVKEKG  300
LHAGDVVGFY RSVAGAGEDS KLFIDCKLRP NSTNTAAAAV FTDLPVDQSA PVAKPVRLFG  360
VDLTIQPAPE QGTAGCKRTT RDFVKPAGPQ VPFKKQCIKL ALV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-522093302114B3 domain-containing transcription factor NGA1
5os9_B7e-522093302114B3 domain-containing transcription factor NGA1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g47220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569603.10.0AP2/ERF and B3 domain-containing protein Os01g0693400
SwissprotQ8RZX90.0Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLI1HQL30.0I1HQL3_BRADI; Uncharacterized protein
STRINGBRADI2G47220.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-98related to ABI3/VP1 2