PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi2g46483.1.p | ||||||||
Common Name | BRADI_2g46483 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 273aa MW: 29896.6 Da PI: 6.8585 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 73 | 7.5e-23 | 12 | 138 | 8 | 125 |
NAM 8 hPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 hPt+ el++ yL +++++ + ++ e+i+++d+y+++P +L + ++ +e+ wyfFs+ ++k+ +g+rk r++k +g W++ +k+ Bradi2g46483.1.p 12 HPTELELIKSYLLPRITSGDdsNKSWEFIHHADVYTADPTSLTEmfppaRTIDGEEVWYFFSPVKTKSVHGQRKVRTVKsgAGCWHSEAGTKT 104 8**************9998855555578**************744676655557889*******************87734677********* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmhe 125 v + +g+ vg ++ + f ++++ + ++t W+m e Bradi2g46483.1.p 105 VWDDRGHRVGHRQFFSFVTKEHGRRVRTGWLMVE 138 ******************9999999*******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.049 | 5 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-13 | 12 | 138 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-32 | 12 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
MITCPVVLSS RHPTELELIK SYLLPRITSG DDSNKSWEFI HHADVYTADP TSLTEMFPPA 60 RTIDGEEVWY FFSPVKTKSV HGQRKVRTVK SGAGCWHSEA GTKTVWDDRG HRVGHRQFFS 120 FVTKEHGRRV RTGWLMVELG IDNEHQVSRS SELVLCKIYM TPREASTPSK GLIDGVEEHM 180 PSKSSLSPSS PPSSSSPPAS PYSSPPSSPS SASPPSPTSS MSPSTPPLLS MSSLPALQKL 240 SSSLVVDDKE EGPTVLPESI NSAAMETIQQ PYF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi2g46483.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153680.1 | 4e-73 | NAC domain-containing protein 72-like | ||||
TrEMBL | A0A0Q3GDB5 | 0.0 | A0A0Q3GDB5_BRADI; Uncharacterized protein (Fragment) | ||||
STRING | OGLUM09G05050.1 | 1e-57 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 | Representative plant | OGRP12016 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G27410.2 | 9e-16 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi2g46483.1.p |