PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g46230.1.p

Common Name

BRADI_2g46230, LOC100827669

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 1846aa MW: 205828 Da PI: 5.0477

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g46230.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	51	105	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++ql++Le+ + ++yps+++r+eL+ k+gL++rq ++WF+ rR k++k Bradi2g46230.1.p 51 KRMMKTPYQLDVLEQTYLAEQYPSEAMRAELSVKIGLSDRQLQMWFCHRRLKDRK 105 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.44E-16	32	105	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.0E-17	36	105	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.613	46	106	IPR001356	Homeobox domain
SMART	SM00389	1.9E-16	48	110	IPR001356	Homeobox domain
CDD	cd00086	1.19E-13	51	106	No hit	No description
Pfam	PF00046	3.1E-15	51	105	IPR001356	Homeobox domain
SMART	SM00571	1.2E-15	624	683	IPR018501	DDT domain
PROSITE profile	PS50827	15.573	624	683	IPR018501	DDT domain
Pfam	PF02791	1.1E-15	627	680	IPR018501	DDT domain
Pfam	PF05066	9.0E-15	799	867	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.6E-9	1021	1063	IPR028942	WHIM1 domain
Pfam	PF15613	5.9E-13	1200	1272	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1846 aa Download sequence Send to blast
MDAGGGDGDG PPLETPEERT SPPPAPATVA APASGSGGGA GPSGSGEKPV KRMMKTPYQL 60 DVLEQTYLAE QYPSEAMRAE LSVKIGLSDR QLQMWFCHRR LKDRKPPAKR QRRDEEAPAA 120 PLLVPPPVLP LQAMLLASSD LMMSAVSPYD EPLPPTHPRR GGGRSSAVPR ISAPDIGRRY 180 YEPLPVMMSP PVASMQFRQA ELRVINSVES QLGEPLREDG PVLGVEFDPL PPGAFGAPIV 240 PEQQKQPVRS YDAKIFSRHD PNLLKVSSFL PSMEHPFVPN SFAGKRKSTI GNTSQDLPHG 300 GSRAVHEYQF LPEQPSDTYE RASRSHYYDT PVEASNSRIS SLTPGSHLLH GSEEVAPGYA 360 FEGQISGSGL LPQSGRPQVF PAASTDYEMN PSNSNLNSVP VEGQFGISQV AGYEDPLISS 420 EGRAHLDEDA SRLDRKRKHN EEAKIAKEVE AHERRIRKEL EKQDMLRKKR EEQMRKEMER 480 HDRERRKEEE RLLRERQREE ERFQREQKRE HERMEKFLQK QSRRAEKQRQ KEELRKEKEA 540 ARQKAANERA TARRIAREYM ELVEDERLEL MELAAQSKGL PSMLSLDSDT LQQLDSFRGM 600 LSQFPPETVK LKVPFLIKPW TGSENNLGNL LMVWKFLITF ADVLGLSAVT LDEFVQSLHD 660 YDSRLLGEFH VALLKSIIKD IEDVARTPSV ALGVNPGGGH PQIVEGAYSW GFNIRSWQHH 720 LNLLTWPEIL RQFALSAGFG PQLKKRNAED VFYRDENEGQ DGQNVISTLR NGSAAVRAAA 780 LMKERGYTHR RSRHRLTPGT VKFAAFHVLS LEESNGLTIL EVAEKIQKSG LRDLTTSKTP 840 EASIAAALSR DTKLFERTAP STYCVKSPYR KDPADSEAIL SAAREKIRAF QNVLSDSEVE 900 KEVDDAERDE DSECDDADDD PDVDDVNIEV GDGDPLAVKA QDVVPMATEV GDIKGEADST 960 DTALTQPISF AKSEKGAIIL SLDKSNAAGT SSVSPLRASS DHHEVITGNA EDAEIDESYQ 1020 GESWVRGLAE GDYYNLSVEE RLNALVALVG VATEGNSIRA VLEERLEAAN AIKKQMWAEA 1080 QLDKRRSKEE FASRMQYSSY TSLKADVNPE HNATETTPTP ARNIDIDTDG NMGAVNNTEM 1140 LDQYSHSNAG NVSYERNGVG QDISSTPDNL SAQQYAYADK TRSQLKSYIG HRAEQLYVYR 1200 SLPLGQDRRR NRYWQFSTSA SPNDPGSGRI FFESRDGYWR VIDSEEAFDS LVASLDTRGS 1260 REAQLHSMLQ RIEATFKEGI KRKSNAATEQ PAGRYLKNGA TDLMQGSYRS EFGSPSSTLS 1320 TVSSDSFRIE LGRNDAEKTA ISKRADGFLK WMWRECYDRK LTCAVKYGKK RCSTLIHSCC 1380 YCYQIYLAEE RHCSSCHKIF KPIHNFSEHV SQCEEKRRTD PNWKMQIEDY SVPIGIRMLK 1440 LQLATIEAMI PSEALQPFWT DGYRKSWGVK LHSTESVEEI FQMLTLLEGA IRRDYLSSEF 1500 ETTSEYLNLN IQDMHSQNPF GLSGASVLTW VPDTIAAITL RMLELDYAVS YTQNQKTERD 1560 GGDSMKLPSR HTVVKKTQHI EPLEPASVDL YDGRWPPSSG RRGRGRGSRG GSRGGRGRSR 1620 GGRVPRGVSS SSRIEFRDDT AAYEKAPRKN ARRGRGRGRG RGRGRRTVRP RQPSSDGRGR 1680 SIPKANLLGS FSMLSNVKPA TVTESPRSSG AEEWGLEDRR PYMEVDENSS GSQSDQSEDI 1740 EENGQPMDED YDEQVPDYSI AYSSGSRPHG VMDDETDEED EDAEGDAEGD EDGEDDDVNH 1800 AAAADDDEMD EDDDIGDDGD DGGDGVEANA DEDEGATSYS SEYSE*

Sequence ? help Back to Top

Protein Sequence Length: 1846 aa Download sequence Send to blast

MDAGGGDGDG PPLETPEERT SPPPAPATVA APASGSGGGA GPSGSGEKPV KRMMKTPYQL  60
DVLEQTYLAE QYPSEAMRAE LSVKIGLSDR QLQMWFCHRR LKDRKPPAKR QRRDEEAPAA  120
PLLVPPPVLP LQAMLLASSD LMMSAVSPYD EPLPPTHPRR GGGRSSAVPR ISAPDIGRRY  180
YEPLPVMMSP PVASMQFRQA ELRVINSVES QLGEPLREDG PVLGVEFDPL PPGAFGAPIV  240
PEQQKQPVRS YDAKIFSRHD PNLLKVSSFL PSMEHPFVPN SFAGKRKSTI GNTSQDLPHG  300
GSRAVHEYQF LPEQPSDTYE RASRSHYYDT PVEASNSRIS SLTPGSHLLH GSEEVAPGYA  360
FEGQISGSGL LPQSGRPQVF PAASTDYEMN PSNSNLNSVP VEGQFGISQV AGYEDPLISS  420
EGRAHLDEDA SRLDRKRKHN EEAKIAKEVE AHERRIRKEL EKQDMLRKKR EEQMRKEMER  480
HDRERRKEEE RLLRERQREE ERFQREQKRE HERMEKFLQK QSRRAEKQRQ KEELRKEKEA  540
ARQKAANERA TARRIAREYM ELVEDERLEL MELAAQSKGL PSMLSLDSDT LQQLDSFRGM  600
LSQFPPETVK LKVPFLIKPW TGSENNLGNL LMVWKFLITF ADVLGLSAVT LDEFVQSLHD  660
YDSRLLGEFH VALLKSIIKD IEDVARTPSV ALGVNPGGGH PQIVEGAYSW GFNIRSWQHH  720
LNLLTWPEIL RQFALSAGFG PQLKKRNAED VFYRDENEGQ DGQNVISTLR NGSAAVRAAA  780
LMKERGYTHR RSRHRLTPGT VKFAAFHVLS LEESNGLTIL EVAEKIQKSG LRDLTTSKTP  840
EASIAAALSR DTKLFERTAP STYCVKSPYR KDPADSEAIL SAAREKIRAF QNVLSDSEVE  900
KEVDDAERDE DSECDDADDD PDVDDVNIEV GDGDPLAVKA QDVVPMATEV GDIKGEADST  960
DTALTQPISF AKSEKGAIIL SLDKSNAAGT SSVSPLRASS DHHEVITGNA EDAEIDESYQ  1020
GESWVRGLAE GDYYNLSVEE RLNALVALVG VATEGNSIRA VLEERLEAAN AIKKQMWAEA  1080
QLDKRRSKEE FASRMQYSSY TSLKADVNPE HNATETTPTP ARNIDIDTDG NMGAVNNTEM  1140
LDQYSHSNAG NVSYERNGVG QDISSTPDNL SAQQYAYADK TRSQLKSYIG HRAEQLYVYR  1200
SLPLGQDRRR NRYWQFSTSA SPNDPGSGRI FFESRDGYWR VIDSEEAFDS LVASLDTRGS  1260
REAQLHSMLQ RIEATFKEGI KRKSNAATEQ PAGRYLKNGA TDLMQGSYRS EFGSPSSTLS  1320
TVSSDSFRIE LGRNDAEKTA ISKRADGFLK WMWRECYDRK LTCAVKYGKK RCSTLIHSCC  1380
YCYQIYLAEE RHCSSCHKIF KPIHNFSEHV SQCEEKRRTD PNWKMQIEDY SVPIGIRMLK  1440
LQLATIEAMI PSEALQPFWT DGYRKSWGVK LHSTESVEEI FQMLTLLEGA IRRDYLSSEF  1500
ETTSEYLNLN IQDMHSQNPF GLSGASVLTW VPDTIAAITL RMLELDYAVS YTQNQKTERD  1560
GGDSMKLPSR HTVVKKTQHI EPLEPASVDL YDGRWPPSSG RRGRGRGSRG GSRGGRGRSR  1620
GGRVPRGVSS SSRIEFRDDT AAYEKAPRKN ARRGRGRGRG RGRGRRTVRP RQPSSDGRGR  1680
SIPKANLLGS FSMLSNVKPA TVTESPRSSG AEEWGLEDRR PYMEVDENSS GSQSDQSEDI  1740
EENGQPMDED YDEQVPDYSI AYSSGSRPHG VMDDETDEED EDAEGDAEGD EDGEDDDVNH  1800
AAAADDDEMD EDDDIGDDGD DGGDGVEANA DEDEGATSYS SEYSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1654	1663	RGRGRGRGRG
2	1654	1664	RGRGRGRGRGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g46230.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566982.1	0.0	homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A0Q3MXW2	0.0	A0A0Q3MXW2_BRADI; Uncharacterized protein
STRING	BRADI2G46230.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Bradi2g46230.1.p
Entrez Gene	100827669