PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g46197.3.p
Common NameBRADI_2g46197, LOC100830207
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 337aa    MW: 36363.6 Da    PI: 9.1063
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g46197.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.37.7e-33732131128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                       lp+G++F+Ptd+el+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+rk+r+++   
  Bradi2g46197.3.p  73 LPAGVKFDPTDQELL-EHLEGKARPDTrklhplV---DefipAIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtde 160
                       799************.99****999985665442...143334766657**********.555555677******************744456 PP

               NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Bradi2g46197.3.p 161 qggETRWHKTGKTRPVFT-DGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 213
                       555778************.99************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-3765232IPR003441NAC domain
PROSITE profilePS5100532.84873232IPR003441NAC domain
PfamPF023655.4E-1574213IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLASA AAVAAAAKKQ QQQQQQQQAS SHVSLVRTCP ACGHHAQYEQ  60
LQAAATIQDL PGLPAGVKFD PTDQELLEHL EGKARPDTRK LHPLVDEFIP AIEGENGICY  120
THPERLPGVG KDGLIRHFFH RPSKAYTTGT RKRRKVHTDE QGGETRWHKT GKTRPVFTDG  180
KLKGYKKILV LYTNYGKQRK PEKTNWVMHQ YHLGSDEEEK DGELVVSKVF FQTQPRQCGG  240
STGAAAAGSS IKSGAAAAAA AEHHHRQNDG GNNNTNNSML KETPGMVDFY SPALIGYSSQ  300
AAPPNNRAAA AAAAAAAAAH LMPNFEVHTG GTGFGP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g46197.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3596310.0AK359631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1100E16.
GenBankAK3700350.0AK370035.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2103P15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569537.10.0NAC domain-containing protein 73 isoform X1
SwissprotO494591e-124NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0Q3R6X70.0A0A0Q3R6X7_BRADI; Uncharacterized protein
STRINGBRADI2G46197.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-115NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]